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Updated: Jun 20, 2026

Site-specific Bacterial Chromosome Engineering: ΦC31 Integrase Mediated Cassette Exchange (IMCE)
Published on: March 16, 2012
tISCpe8, an IS1595-family lincomycin resistance element located on a conjugative plasmid in Clostridium perfringens
Dena Lyras1, Vicki Adams, Susan A Ballard
1Bacterial Pathogenesis Research Group and Australian Research Council Centre of Excellence in Structural and Functional Microbial Genomics, Department of Microbiology, Monash University, Clayton, Victoria 3800, Australia.
Abstract:
Clostridium perfringens is a normal gastrointestinal organism that is a reservoir for antibiotic resistance genes and can potentially act as a source from which mobile elements and their associated resistance determinants can be transferred to other bacterial pathogens. Lincomycin resistance in C. perfringens is common and is usually encoded by erm genes that confer macrolide-lincosamide-streptogramin B resistance. In this study we identified strains that are lincomycin resistant but erythromycin sensitive and showed that the lincomycin resistance determinant was plasmid borne and could be transferred to other C. perfringens isolates by conjugation. The plasmid, pJIR2774, is the first conjugative C. perfringens R-plasmid to be identified that does not confer tetracycline resistance. Further analysis showed that resistance was encoded by the lnuP gene, which encoded a putative lincosamide nucleotidyltransferase and was located on tISCpe8, a functional transposable genetic element that was a member of the IS1595 family of transposon-like insertion sequences. This element had significant similarity to the mobilizable lincomycin resistance element tISSag10 from Streptococcus agalactiae. Like tISSag10, tISCpe8 carries a functional origin of transfer within the resistance gene, allowing the element to be mobilized by the conjugative transposon Tn916. The similarity of these elements and the finding that they both contain an oriT-like region support the hypothesis that conjugation may result in the movement of DNA modules that are not obviously mobile since they are not linked to conjugation or mobilization functions. This process likely plays a significant role in bacterial adaptation and evolution.
Insights
Clostridium perfringens harbors lincomycin resistance genes on a novel conjugative plasmid. This discovery reveals a new mechanism for antibiotic resistance gene transfer in bacteria, impacting microbial evolution.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Clostridium perfringens is a common gut bacterium and a reservoir for antibiotic resistance genes.
- Antibiotic resistance determinants can transfer from C. perfringens to other pathogens.
- Lincomycin resistance in C. perfringens is often mediated by erm genes, conferring resistance to macrolides, lincosamides, and streptogramin B.
Purpose of the Study:
- To investigate lincomycin resistance in C. perfringens strains that are sensitive to erythromycin.
- To characterize the genetic element responsible for lincomycin resistance and its transfer mechanism.
- To identify novel mobile genetic elements involved in antibiotic resistance dissemination.
Main Methods:
- Isolation and characterization of lincomycin-resistant, erythromycin-sensitive C. perfringens strains.
- Conjugation experiments to assess the transferability of the resistance determinant.
- Plasmid analysis and sequencing to identify the resistance gene and mobile genetic element.
- Comparative analysis with known resistance elements from other bacterial species.
Main Results:
- Identified C. perfringens strains with plasmid-borne lincomycin resistance, transferable via conjugation.
- Characterized the novel conjugative R-plasmid pJIR2774, the first identified in C. perfringens lacking tetracycline resistance.
- Determined that lincomycin resistance is encoded by the lnuP gene located on the transposable element tISCpe8.
- Demonstrated significant similarity between tISCpe8 and the Streptococcus agalactiae element tISSag10, including a functional origin of transfer.
Conclusions:
- The lnuP gene on the transposable element tISCpe8 is responsible for lincomycin resistance in the studied C. perfringens strains.
- The conjugative plasmid pJIR2774 represents a new vehicle for antibiotic resistance gene spread.
- The findings support the hypothesis that conjugation facilitates the movement of DNA modules not inherently mobile, contributing to bacterial adaptation and evolution.
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