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Assessment of Immunologically Relevant Dynamic Tertiary Structural Features of the HIV-1 V3 Loop Crown R2 Sequence by ab initio Folding
Published on: September 15, 2010
Adaptive mutations in a human immunodeficiency virus type 1 envelope protein with a truncated V3 loop restore
Caroline Agrawal-Gamse1, Fang-Hua Lee, Beth Haggarty
1Department of Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Human immunodeficiency virus type 1 (HIV-1) adapted to tissue culture regained function through mutations enhancing CD4 binding. These changes increased sensitivity to CD4 binding site antibodies but did not affect CCR5 antagonist resistance.
Area of Science:
- Virology
- Immunology
- Structural Biology
Background:
- A human immunodeficiency virus type 1 (HIV-1) clade B envelope protein with a truncated V3 loop regained function after adaptation.
- The adapted virus (TA1) retained V3 truncation, used CCR5 for entry, was sensitive to neutralization, and resistant to CCR5 antagonists.
Purpose of the Study:
- To investigate the mechanistic basis for the functional recovery and specific properties of the adapted HIV-1 TA1 clone.
- To identify the specific mutations responsible for enhanced envelope function and altered neutralization sensitivity.
Main Methods:
- Introduced individual and combined mutations from TA1 into the parental envelope.
- Assessed envelope function, CD4 binding, CCR5 utilization, and neutralization sensitivity.
Main Results:
- Single amino acid changes in C3, V3 loop, and fusion peptide restored envelope function.
- T342A mutation, losing a C3 glycosylation site, was primary.
- Mutations enhanced CD4 binding and responsiveness, increasing sensitivity to CD4 binding site antibodies.
- Mutations reduced CCR5 interaction efficiency and increased sensitivity to CCR5 N-terminal antibodies.
Conclusions:
- Enhanced CD4 utilization is a key mechanism for HIV-1 to compensate for V3 loop mutations affecting CCR5 interactions.
- The findings provide insights into HIV-1 adaptation, neutralization, and potential therapeutic targets.
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