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Related Concept Videos

Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
RNA Editing02:23

RNA Editing

RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...

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Published on: April 26, 2017

Sculpting AMPA receptor formation and function by alternative RNA processing.

Andrew C Penn1, Ingo H Greger

  • 1Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.

RNA Biology
|September 1, 2009
PubMed
Summary

This article explores how specific modifications to RNA, such as editing and alternative splicing, control the creation and behavior of AMPA receptors, which are essential for fast communication between brain cells. By altering the structure of these receptors, these processes help fine-tune how neurons respond to signals.

Keywords:
synaptic transmissionion channelspost-transcriptional regulationneuronal plasticity

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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
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Quantitative Analysis of Alternative Pre-mRNA Splicing in Mouse Brain Sections Using RNA In Situ Hybridization Assay

Published on: August 26, 2018

Area of Science:

  • Neuroscience and AMPA receptor molecular biology
  • Cellular physiology and RNA processing mechanisms

Background:

No prior work has fully resolved how post-transcriptional modifications dictate the structural maturation of excitatory ion channels. Prior research has shown that these proteins exist as tetramers within the vertebrate central nervous system. That uncertainty drove interest in how specific genetic variations influence receptor biogenesis. It was already known that the endoplasmic reticulum serves as the primary site for initial protein folding. This gap motivated detailed investigations into how RNA-level changes impact polypeptide interfaces. Previous studies established that adenosine-to-inosine transitions occur frequently in neuronal transcripts. Researchers have long suspected that these molecular shifts alter the physical properties of resulting ion channels. No prior work had resolved the precise interplay between splicing events and recoding sites during early assembly stages.

Purpose Of The Study:

The aim of this study is to elucidate how alternative RNA processing events dictate the formation and functional properties of AMPA receptors. The researchers seek to clarify the relationship between post-transcriptional modifications and the structural maturation of these ion channels. This investigation addresses the specific problem of how genetic elements like editing sites and splice exons coordinate their activities. The authors are motivated by the need to understand how these molecular processes influence the speed of excitatory neurotransmission. They explore the hypothesis that regulated mRNA recoding provides a mechanism for neurons to sculpt their own response properties. The study examines the spatial positioning of recoding sites to determine their impact on subunit assembly within the endoplasmic reticulum. By analyzing these interactions, the researchers intend to provide a clearer picture of how RNA-level control shapes protein behavior. This work aims to establish a link between genomic arrangement and the physiological output of vertebrate brain circuits.

Main Methods:

This review approach synthesizes existing literature regarding the molecular regulation of excitatory ion channels. The authors examine structural data to map the location of recoding sites relative to subunit interfaces. Their analysis focuses on the genomic organization of splice donor regions and their proximity to editing motifs. The researchers evaluate how these genetic elements interact to influence protein folding within the endoplasmic reticulum. This study utilizes comparative models to illustrate the consequences of alternative splicing on receptor tetramerization. The team assesses the potential for neuronal activity to modulate these post-transcriptional events. Their approach integrates findings from diverse studies to construct a comprehensive model of receptor biogenesis. This methodology provides a framework for understanding how RNA-level changes translate into functional physiological outcomes.

Main Results:

Key findings from the literature indicate that adenosine-to-inosine editing sites are strategically positioned at the interfaces of subunit polypeptides. The authors report that these modifications directly influence the assembly process of ion channel tetramers. Research shows that the R/G editing site is situated within the splice donor of alternative flip/flop exons. This arrangement facilitates a functional cross-talk between splicing and editing mechanisms. The evidence suggests that regulated mRNA recoding has the capacity to sculpt the final properties of the receptor. Data indicate that these modifications are responsive to neuronal activity, allowing for dynamic changes in synaptic signaling. The findings demonstrate that the structural maturation of receptors in the endoplasmic reticulum is highly dependent on these RNA processing events. The synthesis confirms that the combination of editing and splicing provides a robust mechanism for shaping neuronal response properties.

Conclusions:

The authors propose that post-transcriptional modifications serve as a primary mechanism for sculpting the functional diversity of ion channels. Synthesis and implications suggest that the spatial arrangement of editing sites allows for direct influence over subunit interactions. The researchers highlight that the proximity of splice donor regions to specific recoding locations facilitates complex regulatory cross-talk. This review approach indicates that neuronal activity may trigger dynamic changes in transcript processing to modify synaptic responses. The authors claim that these molecular events provide a versatile toolkit for neurons to adjust their excitability. Their synthesis implies that such mechanisms are vital for maintaining the plasticity of excitatory neurotransmission. The evidence suggests that the integration of splicing and editing creates a sophisticated layer of control over receptor biogenesis. These findings underscore the importance of RNA-level regulation in shaping the physiological output of vertebrate brain circuits.

The researchers propose that RNA editing and alternative splicing modulate the assembly of ion channel tetramers. By altering polypeptide interfaces, these processes dictate the final functional properties of the receptor, which directly influences the speed and strength of excitatory signaling within the brain.

The authors identify the R/G editing site as a key component located within the splice donor of flip/flop exons. This specific genomic arrangement allows for direct interaction between different genetic elements, facilitating a coordinated regulatory effect on the resulting protein structure.

The researchers suggest that the endoplasmic reticulum is necessary for the initial biogenesis and folding of these tetramers. This organelle provides the environment where subunit polypeptides interact, and its efficiency is influenced by the modifications dictated by the underlying RNA sequences.

The authors describe how mRNA recoding acts as a dynamic data type that responds to neuronal activity. This regulation allows the cell to adjust the composition of its ion channels in real-time, effectively sculpting the response properties of the neuron based on external stimuli.

The study focuses on the measurement of adenosine-to-inosine transitions within neuronal transcripts. This phenomenon is observed to occur at specific sites that line the interfaces of subunit polypeptides, thereby providing a physical basis for modulating the assembly of the receptor complex.

The authors propose that the ability of neurons to sculpt their own receptors through RNA processing allows for the fine-tuning of synaptic responses. This implies that the brain uses these post-transcriptional events to maintain flexibility and adapt its communication pathways to changing environmental demands.