Alternative splicing of ADAM15 regulates its interactions with cellular SH3 proteins

Iivari Kleino1, Rebekka M Ortiz, Miljamartta Yritys

  • 1Department of Virology, Haartman Institute, Helsinki University Central Hospital, University of Helsinki and HUSLAB, Haartmaninkatu 3, P.O. Box 21, FIN-00014 Helsinki, Finland.

Insights

Alternative splicing of ADAM15 (A Disintegrin And Metalloprotease 15) isoforms dictates interactions with cellular partners like nephrocystin and SNX33. This splicing mechanism regulates ADAM15 functions, potentially explaining its varied roles in cancer.

Area of Science:

  • Molecular Biology
  • Cell Biology
  • Biochemistry

Background:

  • A Disintegrin And Metalloprotease (ADAM15) is linked to cancer, potentially through cadherin shedding.
  • Alternative mRNA splicing creates diverse ADAM15 isoforms with distinct cytosolic tail features.

Purpose of the Study:

  • To comprehensively characterize the Src homology-3 (SH3) domain binding potential of different ADAM15 isoforms.
  • To investigate how alternative splicing influences ADAM15 interactions with cellular partner proteins.

Main Methods:

  • Co-precipitation assays to identify binding partners.
  • Analysis of ADAM15 isoforms and their specific exon usage.
  • Identification of key amino acid residues for protein binding.

Main Results:

  • Alternative splicing significantly alters SH3-binding protein selection for ADAM15.
  • Nephrocystin specifically binds to ADAM15 isoforms i4, i5, and i6 via RxLPxxP motifs in exons 20/21.
  • Sorting nexin-33 (SNX33) associates with ADAM15 isoforms containing a specific carboxyterminal proline cluster.

Conclusions:

  • Alternative mRNA splicing is a key regulatory mechanism for ADAM15 intracellular protein interactions.
  • Differential protein binding by ADAM15 isoforms may explain their varied associations with cancer.

Related Concept Videos

RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
Exon Recombination02:32

Exon Recombination

The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon has three reading...