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Updated: Jun 20, 2026

Using the E1A Minigene Tool to Study mRNA Splicing Changes
Published on: April 22, 2021
Alternative splicing of ADAM15 regulates its interactions with cellular SH3 proteins
Iivari Kleino1, Rebekka M Ortiz, Miljamartta Yritys
1Department of Virology, Haartman Institute, Helsinki University Central Hospital, University of Helsinki and HUSLAB, Haartmaninkatu 3, P.O. Box 21, FIN-00014 Helsinki, Finland.
Abstract:
A Disintegrin And Metalloprotease (ADAM15) is a member of the adamalysin protein family and has been associated with cancer, possibly via its role in ectodomain shedding of cadherins. Alternative mRNA splicing generates several ADAM15 isoforms containing different combinations of putative Src homology-3 (SH3) domain binding sites in their cytosolic tails. Here we present a comprehensive characterization of SH3 binding potential of different ADAM15 isoforms. Alternative use of ADAM15 exons was found to profoundly influence selection of SH3-containing cellular partner proteins, including the avid interactions with nephrocystin and sorting nexin-33 (SNX33 a.k.a. SNX30). Specifically, strong co-precipitation of nephrocystin from cell lysates was specific to ADAM15 isoforms i4, i5, and i6. These isoforms contain one or both of the two almost identical proline-rich regions encoded by exons 20 and 21, wherein the residues RxLPxxP were found to be indispensable for nephrocystin SH3 binding. Similarly, robust cellular association with SNX33 was observed only for ADAM15 isoforms containing the most carboxyterminal proline cluster lacking in isoforms i1 and i3. Thus, alternative mRNA splicing provides a versatile mechanism for regulation of intracellular protein interactions and thereby likely the cellular functions of ADAM15, which could explain the association with cancer of some but not all ADAM15 isoforms.
Insights
Alternative splicing of ADAM15 (A Disintegrin And Metalloprotease 15) isoforms dictates interactions with cellular partners like nephrocystin and SNX33. This splicing mechanism regulates ADAM15 functions, potentially explaining its varied roles in cancer.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- A Disintegrin And Metalloprotease (ADAM15) is linked to cancer, potentially through cadherin shedding.
- Alternative mRNA splicing creates diverse ADAM15 isoforms with distinct cytosolic tail features.
Purpose of the Study:
- To comprehensively characterize the Src homology-3 (SH3) domain binding potential of different ADAM15 isoforms.
- To investigate how alternative splicing influences ADAM15 interactions with cellular partner proteins.
Main Methods:
- Co-precipitation assays to identify binding partners.
- Analysis of ADAM15 isoforms and their specific exon usage.
- Identification of key amino acid residues for protein binding.
Main Results:
- Alternative splicing significantly alters SH3-binding protein selection for ADAM15.
- Nephrocystin specifically binds to ADAM15 isoforms i4, i5, and i6 via RxLPxxP motifs in exons 20/21.
- Sorting nexin-33 (SNX33) associates with ADAM15 isoforms containing a specific carboxyterminal proline cluster.
Conclusions:
- Alternative mRNA splicing is a key regulatory mechanism for ADAM15 intracellular protein interactions.
- Differential protein binding by ADAM15 isoforms may explain their varied associations with cancer.
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