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Updated: Jun 20, 2026
Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization
Published on: October 3, 2025
[Identification of differentially expressed genes in myocardium of patients with heart failure by human whole genomic
Xiao-Xia Wu1, Tao Wan, Hong-Jin Wu
1Department of Cardiology, General Hospital of Chinese People's Armed Police Forces, Beijing 100039, China.
Objective:
To identify the differentially expressed gene profiles in myocardium of patients with heart failure using human whole genomic oligonucleotide microarray-assisted pathway analysis.
Methods:
Phalanx whole genomic oligonucleotide microarrays were used to detect the gene expression profiles of myocardium in four patients died of heart failure and 4 brain died patients without heart diseases. The microarray findings were confirmed by real-time quantitative reverse transcriptase-polymerase chain reaction. The genes with a threshold of 1.2 times fold-change were selected and BioCarta Pathway and KEGG (Kyoto Encyclopaedia of Genes and Genomes) pathway databases were used to identify functionally related gene pathways.
Results:
A total of 2806 genes with differentially expression were detected between the failing and non-failing heart samples, expression changes of 399 genes were more than 2-folds. Eleven pathways were identified by BioCarta pathway database and sixteen pathways were identified by KEGG PATHWAY Database.
Conclusion:
Genomic microarray-assisted pathway analysis could help to identify gene expression profiles in failing heart.
