Related Experiment Video
Updated: Jun 20, 2026

Bioluminescence Resonance Energy Transfer (BRET)-Based Assay for Measuring Interactions of CRAF with 14-3-3 Proteins in Live Cells
Published on: March 1, 2024
A RasGTP-induced conformational change in C-RAF is essential for accurate molecular recognition
Kayo Hibino1, Tatsuo Shibata, Toshio Yanagida
1Cellular Informatics Laboratory, RIKEN, Wako, Japan.
Abstract:
The dysregulation of Ras-RAF signaling is associated with many types of human cancer. However, the kinetic and dynamic features of the mutual molecular recognition of Ras and RAF remain unknown. Here, we developed a technique for imaging single-pair fluorescence resonance energy transfer in living cells, and coupled this technique to single-molecule kinetic analysis to investigate how C-RAF (a subtype of RAF) molecules distinguish the active form of Ras (RasGTP) from the inactive form (RasGDP). Functional fragments of C-RAF containing the Ras-binding domains did not detect the switch in Ras activity in living cells as efficiently as did C-RAF. Single-molecule analysis showed that RasGDP associates with closed-conformation C-RAF, whereas the association of C-RAF with RasGTP immediately triggers the open RAF conformation, which induces an effective interaction between C-RAF and RasGTP. Spontaneous conformational changes from closed C-RAF to the open form rarely occur in quiescent cells. The conformational change in C-RAF is so important to Ras-RAF molecular recognition that C-RAF mutants lacking the conformational change cannot distinguish between RasGDP and RasGTP. The manipulation of the conformation of an effector molecule is a newly identified function of RasGTP.
Insights
Ras-RAF signaling is crucial in cancer. New research reveals how C-RAF distinguishes active RasGTP from inactive RasGDP by changing its conformation, a key step in molecular recognition.
Area of Science:
- Molecular biology
- Cellular signaling
- Cancer research
Background:
- Ras-RAF signaling pathway dysregulation is implicated in numerous human cancers.
- The precise kinetic and dynamic mechanisms of Ras-RAF molecular recognition are not fully understood.
Purpose of the Study:
- To investigate how C-RAF distinguishes between active RasGTP and inactive RasGDP in living cells.
- To elucidate the role of C-RAF conformational changes in Ras-RAF molecular recognition.
Main Methods:
- Development of a technique for imaging single-pair fluorescence resonance energy transfer (spFRET) in living cells.
- Coupling spFRET with single-molecule kinetic analysis to study Ras-RAF interactions.
- Utilizing C-RAF mutants lacking conformational flexibility.
Main Results:
- Full-length C-RAF, but not its fragments, efficiently detected Ras activity switching in living cells.
- RasGDP binds to closed-conformation C-RAF; RasGTP binding induces C-RAF to adopt an open conformation, enhancing interaction.
- Spontaneous C-RAF conformational changes from closed to open states are rare in quiescent cells.
- C-RAF mutants unable to undergo conformational changes failed to differentiate between RasGDP and RasGTP.
Conclusions:
- RasGTP actively manipulates the conformation of its effector, C-RAF, which is essential for specific molecular recognition.
- Conformational change in effector molecules is a newly identified function of RasGTP.
- Understanding these dynamics offers insights into cancer signaling and potential therapeutic targets.
More Related Videos
Related Concept Videos
MAPK Signaling Cascades
Small GTPases - Ras and Rho
Three regulatory proteins control their activity:
The Ras Gene
Ras is a superfamily...
Rab Proteins
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
Rab Cascades
Receptor Tyrosine Kinases

