Related Experiment Video
Updated: Jun 20, 2026

09:34
Synthesis of Information-bearing Peptoids and their Sequence-directed Dynamic Covalent Self-assembly
Published on: February 6, 2020
Octapi interactions: self-assembly of a Pd-based [2]catenane driven by eightfold pi interactions.
Jinzhen Lu1, David R Turner, Lindsay P Harding
1School of Chemistry, Monash University, Clayton, VIC 3800, Australia.
Journal of the American Chemical Society
|September 3, 2009
Summary
A unique pi-interaction array enables the creation of a [2]catenane, a mechanically interlocked molecule. Altering the ligand length prevents catenane formation, yielding only separate rings.
Area of Science:
- Supramolecular Chemistry
- Organic Chemistry
- Materials Science
Background:
- Catenanes are mechanically interlocked molecular architectures with unique properties.
- Pi-pi interactions are crucial non-covalent forces in molecular assembly.
- Controlling the formation of complex interlocked structures remains a challenge.
Purpose of the Study:
- To investigate the role of pi-pi interactions in templating the formation of [2]catenanes.
- To explore the influence of ligand length on catenane synthesis.
- To characterize the stability of the formed catenated complex in solution.
Main Methods:
- Synthesis of metallamacrocycles using aromatic ligands.
- Self-assembly driven by pi-pi interactions.
- Spectroscopic and structural analysis (e.g., NMR, X-ray crystallography) to confirm structure and interlocked state.
Main Results:
- An array of eight aromatic rings and 2.5 nm pi-pi interactions successfully templated the formation of a [2]catenane.
- Using longer ligands disrupted the pi-interaction array, leading to the formation of uncatenated rings.
- The [2]catenane was observed to be stable in solution, coexisting with its precursor metallamacrocycles.
Conclusions:
- Precise control over pi-pi interaction geometry is essential for templating complex interlocked molecules like catenanes.
- Ligand design is a critical factor in directing the self-assembly pathway towards catenation or simple macrocyclization.
- The study demonstrates a method for constructing and stabilizing mechanically interlocked molecules via non-covalent interactions.
Related Concept Videos
Mechanism of Filopodia Formation
Filopodia are thin, actin-rich cellular protrusions that play an important role in many fundamental cellular functions. They vary in their occurrence, length, and positioning in different cell types, suggesting their diverse roles.
Their main function is to guide migrating cells during normal tissue morphogenesis or cancer metastasis by recognizing and making initial contacts with the extracellular matrix. However, they can also act as stationary cell anchors or help to establish communication...
Their main function is to guide migrating cells during normal tissue morphogenesis or cancer metastasis by recognizing and making initial contacts with the extracellular matrix. However, they can also act as stationary cell anchors or help to establish communication...
Mechanism of Lamellipodia Formation
Cells migrating in response to external stimuli form lamellipodia, which are thin membrane protrusions supported by a mesh of linked, branched, or unbranched actin filaments. These actin filaments interact with myosin motor proteins, creating the dynamic actomyosin complex within the cytoskeleton. Contractility, or the ability to generate contractile stress, is inherent to the actomyosin complex. It helps cells detect the stiffness of the surrounding ECM and exert contractile force for...
Coat Assembly and GTPases
Vesicles incorporate different coat protein subunits in different cell locations, which changes the properties of the coat, such as the shape and geometry of the transport vesicles. Thus, vesicle coat proteins also play a significant role in cargo selection.
Coat assembly depends on the local availability of phosphatidylinositol phosphates or PIPs and GTP-binding proteins. Adaptor proteins, which link the coat proteins to the membrane, bind to these PIPs and play a crucial role in controlling...
Coat assembly depends on the local availability of phosphatidylinositol phosphates or PIPs and GTP-binding proteins. Adaptor proteins, which link the coat proteins to the membrane, bind to these PIPs and play a crucial role in controlling...
Assembly of Cytoskeletal Filaments
Cytoskeletal filaments are polymeric forms of smaller protein subunits. However, individual cytoskeletal filaments may easily disassemble or associate with other similar filaments to form rigid structures. Microfilaments, made of actin monomers, rely on actin-binding proteins to form bundles and create networks of individual actin filaments. Microtubules rely on microtubule-associated proteins (MAPs) to form sturdy cylindrical structures. However, the proteins involved in forming complex...
Spindle Assembly
Spindle assembly occurs through three, often coexisting, pathways – the centrosome-mediated pathway, the chromatin-mediated pathway, and the microtubule-mediated pathway – collectively contributing to form a robust spindle apparatus.
In most cells, centrosomes are the primary microtubule nucleation centers. In the centrosome-mediated pathway, the G2-prophase transition triggers centrosome maturation and increased microtubule nucleation. Progressive nucleation results in a microtubule array...
In most cells, centrosomes are the primary microtubule nucleation centers. In the centrosome-mediated pathway, the G2-prophase transition triggers centrosome maturation and increased microtubule nucleation. Progressive nucleation results in a microtubule array...
Protein Complex Assembly
Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types. Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Many viruses self-assemble into a fully functional unit using the infected host cell to...

