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Plant Breeding and Biotechnology01:59

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Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.
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Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
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Published on: June 17, 2012

Bioinformatics in the orphan crops.

Ian Armstead1, Lin Huang, Adriana Ravagnani

  • 1Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion SY23 3EB, Wales, UK.

Briefings in Bioinformatics
|September 8, 2009
PubMed
Summary
This summary is machine-generated.

Bioinformatics offers opportunities for orphan crops like forage grasses, legumes, and energy crops. Leveraging comparative genomics can accelerate research and improve these vital agricultural resources.

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Area of Science:

  • Agricultural Science
  • Bioinformatics
  • Genomics

Background:

  • Orphan crops lack significant public bioinformatics resources despite their agricultural importance.
  • These crops include food, animal feed, and energy sources.
  • Relatedness to model plant species offers potential for comparative genomics.

Purpose of the Study:

  • To review the challenges and opportunities of bioinformatics for orphan crops.
  • To highlight the application of bioinformatics in crop improvement.
  • To use specific examples for illustration.

Main Methods:

  • Review of existing literature on bioinformatics and orphan crops.
  • Case studies of forage grasses (Lolium, Festuca), forage legumes, and Miscanthus.
  • Exploration of comparative genomics approaches.

Main Results:

  • Comparative genomics can aid research and improvement in related orphan crops.
  • Challenges exist in developing public bioinformatics resources for orphan crops.
  • Opportunities lie in applying existing genomic knowledge to understudied species.

Conclusions:

  • Bioinformatics tools and comparative genomics are crucial for advancing orphan crop research.
  • Targeted investment in bioinformatics can unlock the potential of these important agricultural crops.
  • Further development of public resources is needed to support orphan crop improvement.