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Related Concept Videos

Variability: Analysis01:11

Variability: Analysis

Measures of variability are statistical metrics that reveal the dispersion pattern within a dataset. They are pivotal in biostatistics, providing insights into the heterogeneity within health and biological data. Variability signifies the degree to which data points diverge from one another, helping researchers understand the potential range of values and associated uncertainty within the data.
The range is a simple measure of variability, indicating the difference between the highest and...
Variance01:15

Variance

The deviations show how spread out the data are about the mean. A positive deviation occurs when the data value exceeds the mean, whereas a negative deviation occurs when the data value is less than the mean. If the deviations are added, the sum is always zero. So one cannot simply add the deviations to get the data spread. By squaring the deviations, the numbers are made positive; thus, their sum will also be positive.The standard deviation measures the spread in the same units as the data.
DNA Microarrays02:34

DNA Microarrays

Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
One-Way ANOVA: Equal Sample Sizes01:15

One-Way ANOVA: Equal Sample Sizes

One-Way ANOVA can be performed on three or more samples with equal or unequal sample sizes. When one-way ANOVA is performed on two datasets with samples of equal sizes, it can be easily observed that the computed F statistic is highly sensitive to the sample mean.
Different sample means can result in different values for the variance estimate: variance between samples. This is because the variance between samples is calculated as the product of the sample size and the variance between the...
What is Variation?01:14

What is Variation?

Apart from the measures of central tendency, distribution, outliers, and the changing characteristics of data with time, an important characteristic of any data set is its variation or spread. In some data sets, the data values are concentrated closely near the mean; in others, the data values are more widely spread out from the mean.
The range, standard deviation, standard error, and variance are the different measures of variation.
Range: The range is the difference between its maximum and...
Estimating Population Mean with Unknown Standard Deviation01:22

Estimating Population Mean with Unknown Standard Deviation

In practice, we rarely know the population standard deviation. In the past, when the sample size was large, this did not present a problem to statisticians. They used the sample standard deviation s as an estimate for σ and proceeded as before to calculate a confidence interval with close enough results. However, statisticians ran into problems when the sample size was small. A small sample size caused inaccuracies in the confidence interval.
William S. Gosset (1876–1937) of the Guinness...

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An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
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Published on: November 3, 2010

Variance estimation in the analysis of microarray data.

Yuedong Wang1, Yanyuan Ma, Raymond J Carroll

  • 1University of California, Santa Barbara, USA.

Journal of the Royal Statistical Society. Series B, Statistical Methodology
|September 15, 2009
PubMed
Summary
This summary is machine-generated.

Accurate variance estimation in microarrays is crucial. New methods address bias from limited data, improving reliability for high-throughput technologies like microarrays.

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Area of Science:

  • Genomics
  • Biostatistics

Background:

  • Microarrays are essential high-throughput tools.
  • Limited replications cause unreliable variance estimates in statistical analyses.

Purpose of the Study:

  • To develop unbiased methods for estimating variance as a function of the mean in microarray data.
  • To address the errors-in-variables bias in variance estimation.

Main Methods:

  • Proposed three novel methods for variance function estimation.
  • Two methods adapt the heteroscedastic simulation-extrapolation (HSIMEX) estimator.
  • The third method uses semiparametric information calculations.

Main Results:

  • Simulations demonstrate the proposed methods are powerful and unbiased.
  • The new methods outperform naive approaches that ignore measurement error.
  • Methodology validated on leukemia patient microarray data.

Conclusions:

  • The developed methods provide reliable variance estimation for microarrays.
  • These techniques overcome limitations of conventional methods with few degrees of freedom.
  • Improved statistical analysis for high-throughput genomic data.