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Updated: Jun 20, 2026

Circadian Entrainment of Drosophila Melanogaster
Published on: June 3, 2020
Genetic analysis of ectopic circadian clock induction in Drosophila
Valerie L Kilman1, Ravi Allada
1Department of Neurobiology and Physiology, Center for Sleep and Circadian Biology, Northwestern University, Evanston, Illinois 60208, USA. v-kilman@northwestern.edu
Abstract:
Cell-autonomous feedback loops underlie the molecular oscillations that define circadian clocks. In Drosophila the transcription factor Clk activates multiple clock components of feedback loops many of which feed back and regulate Clk expression or activity. Previously the authors evoked similar molecular oscillations in putatively naïve neurons in Drosophila by ectopic expression of a single gene, Clk, suggesting a master regulator function. Using molecular oscillations of the core clock component PERIOD (PER), the authors observed dramatic and widespread molecular oscillations throughout the brain in flies expressing ectopic Clk. Consistent with the master regulator hypothesis, they found that Clk is uniquely capable of inducing ectopic clocks as ectopic induction of other clock components fails to induce circadian rhythms. Clk also induces oscillations even when expression is adult restricted, suggesting that ectopic clocks can even be induced in differentiated cells. However, if transgene expression is discontinued, PER expression disappears, indicating that Clk must be continually active to sustain ectopic clock function. In some cases Clk-mediated PER induction was observed without apparent synchronous cycling, perhaps due to desynchronization of rhythms between clocks or truly cell autonomous arrhythmic PER expression, indicating that additional factors may be necessary for coherent rhythms in cells ectopically expressing Clk. To determine minimal requirements for circadian clock induction by Clk, the authors determined the genetic requirements of ectopic clocks. No ectopic clocks are induced in mutants of Clk's heterodimeric partner cyc. In addition, noncycling PER is observed when ectopic Clk is induced in a cryb mutant background. While other factors may contribute, these results indicate that persistent Clock induction is uniquely capable of broadly inducing ectopic rhythms even in adults, consistent with a special role at the top of a clock gene hierarchy.
Insights
The transcription factor Clock (Clk) uniquely induces molecular oscillations, establishing ectopic circadian rhythms in Drosophila neurons. Continuous Clk activity is essential for sustained rhythms, highlighting its master regulator role in the fly brain clock gene hierarchy.
Area of Science:
- Chronobiology
- Neuroscience
- Molecular Biology
Background:
- Circadian clocks rely on cell-autonomous feedback loops for molecular oscillations.
- The transcription factor Clock (Clk) is a key activator in Drosophila circadian clock feedback loops.
- Previous studies suggested Clk acts as a master regulator by inducing oscillations.
Purpose of the Study:
- To investigate if Clk can induce ectopic circadian rhythms in naive Drosophila neurons.
- To determine the minimal genetic requirements for Clk-induced ectopic clocks.
- To explore Clk's role as a master regulator in circadian clock gene hierarchy.
Main Methods:
- Ectopic expression of Clk in Drosophila neurons.
- Monitoring molecular oscillations of the core clock component PERIOD (PER).
- Genetic analysis using Clk, cyc, and cryb mutant backgrounds.
Main Results:
- Ectopic Clk expression induced widespread molecular oscillations throughout the Drosophila brain.
- Clk uniquely induced ectopic clocks, unlike other clock components.
- Clk-induced oscillations persisted only with continuous expression and required specific genetic partners (cyc, cryb).
Conclusions:
- Persistent Clock induction is uniquely capable of inducing ectopic circadian rhythms, even in adult differentiated cells.
- Clk plays a special role at the top of the circadian clock gene hierarchy.
- Additional factors may be necessary for coherent, synchronized rhythms in ectopically induced clocks.
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