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From Constructs to Crystals – Towards Structure Determination of β-barrel Outer Membrane Proteins
Published on: July 4, 2016
The beta-barrel outer membrane protein assembly complex of Neisseria meningitidis
Elena B Volokhina1, Frank Beckers, Jan Tommassen
1Department of Molecular Microbiology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.
Abstract:
The evolutionarily conserved protein Omp85 is required for outer membrane protein (OMP) assembly in gram-negative bacteria and in mitochondria. Its Escherichia coli homolog, designated BamA, functions with four accessory lipoproteins, BamB, BamC, BamD, and BamE, together forming the beta-barrel assembly machinery (Bam). Here, we addressed the composition of this machinery and the function of its components in Neisseria meningitidis, a model organism for outer membrane biogenesis studies. Analysis of genome sequences revealed homologs of BamC, BamD (previously described as ComL), and BamE and a second BamE homolog, Mlp. No homolog of BamB was found. As in E. coli, ComL/BamD appeared essential for viability and for OMP assembly, and it could not be replaced by its E. coli homolog. BamE was not essential but was found to contribute to the efficiency of OMP assembly and to the maintenance of OM integrity. A bamC mutant showed only marginal OMP assembly defects, but the impossibility of creating a bamC bamE double mutant further indicated the function of BamC in OMP assembly. An mlp mutant was unaffected in OMP assembly. The results of copurification assays demonstrated the association of BamC, ComL, and BamE with Omp85. Semi-native gel electrophoresis identified the RmpM protein as an additional component of the Omp85 complex, which was confirmed in copurification assays. RmpM was not required for OMP folding but stabilized OMP complexes. Thus, the Bam complex in N. meningitidis consists of Omp85/BamA plus RmpM, BamC, ComL/BamD, and BamE, of which ComL/BamD and BamE appear to be the most important accessory components for OMP assembly.
Insights
The Neisseria meningitidis beta-barrel assembly machinery (Bam) complex includes Omp85/BamA, RmpM, BamC, ComL/BamD, and BamE. ComL/BamD and BamE are crucial for outer membrane protein assembly and cell viability.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- The Omp85 protein is essential for outer membrane protein (OMP) assembly in gram-negative bacteria.
- In Escherichia coli, Omp85 (BamA) functions with accessory lipoproteins forming the beta-barrel assembly machinery (Bam) complex.
- Neisseria meningitidis serves as a model for studying outer membrane biogenesis.
Purpose of the Study:
- To investigate the composition and function of the Bam complex in Neisseria meningitidis.
- To identify the accessory proteins involved in OMP assembly in N. meningitidis.
- To elucidate the roles of individual components in the Omp85-mediated assembly pathway.
Main Methods:
- Genome sequence analysis to identify homologs of Bam components.
- Genetic analysis, including mutant construction and phenotypic characterization.
- Biochemical assays such as copurification and semi-native gel electrophoresis.
Main Results:
- N. meningitidis possesses homologs of BamC, BamD (ComL), and BamE, but not BamB. A second BamE homolog, Mlp, was identified.
- ComL/BamD is essential for viability and OMP assembly, while BamE contributes to assembly efficiency and outer membrane integrity.
- RmpM was identified as a novel component of the Omp85 complex, stabilizing OMP complexes without being essential for folding.
Conclusions:
- The N. meningitidis Bam complex comprises Omp85/BamA, RmpM, BamC, ComL/BamD, and BamE.
- ComL/BamD and BamE are critical accessory components for OMP assembly.
- The findings provide insights into the conserved yet distinct mechanisms of outer membrane biogenesis in gram-negative bacteria.
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