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Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
A characteristic syndrome associated with microduplication of 8q12, inclusive of CHD7
Anna M Lehman1, Jan M Friedman, David Chai
1Department of Medical Genetics, University of British Columbia, Canada.
Insights
A rare genetic duplication involving the CHD7 gene on chromosome 8q12 was identified in a child with developmental delays and congenital anomalies. This finding suggests abnormal gene dosage may cause a CHARGE syndrome-like phenotype.
Area of Science:
- Genetics
- Developmental Biology
- Pediatrics
Background:
- CHARGE syndrome, typically caused by CHD7 mutations, presents with multiple congenital anomalies.
- Genetic duplications in the 8q12 region, including CHD7, are rare causes of developmental disorders.
Observation:
- A 4-year-old girl exhibited hypotonia, developmental delay, failure to thrive, cognitive impairment, and multiple congenital anomalies.
- Array comparative genomic hybridization revealed a de novo tandem duplication of 6.9 Mb on chromosome 8q12, encompassing the CHD7 gene.
Findings:
- The patient presented with a phenotype including Duane anomaly, Mondini malformation, deafness, ear malformations, and septal defects.
- This case, along with a previously reported individual, suggests a recurrent pattern of anomalies in 8q12 duplications involving CHD7.
Implications:
- Overlapping duplications of the 8q12 region containing CHD7 may lead to a distinct phenotype due to abnormal gene dosage.
- Further research into CHD7 dosage effects is warranted for understanding developmental disorders and genetic syndromes.
Abstract:
This report describes a 4 year-old girl with history of hypotonia, developmental delay, and failure to thrive in infancy. She has cognitive impairment and multiple congenital anomalies, including Duane anomaly, Mondini malformation with associated deafness, external ear malformations, and atrial and ventricular septal defects. Array comparative genomic hybridization demonstrated a de novo tandem 6.9 Mb duplication of at least 15 genes in chromosome 8q12, inclusive of CHD7, with breakpoints at 58,388,614 bp and 65,306,097 bp (NCBI build 36.1). Loss of CHD7 by microdeletion or intragenic mutation causes CHARGE syndrome. There is one previous report of an individual with microduplication of 8q12 involving CHD7. He also had early hypotonia, cognitive impairment, Duane anomaly, sensorineural deafness and a congenital heart defect. This rather specific recurrent pattern of congenital anomalies associated with overlapping duplications of the genomic region containing CHD7 suggests that the phenotype in these two patients may be the result of abnormal CHD7 dosage.
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