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Updated: Jun 20, 2026

Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions
Published on: September 28, 2017
Nuclear export factor RBM15 facilitates the access of DBP5 to mRNA
Andrei S Zolotukhin1, Hiroaki Uranishi, Susan Lindtner
1Human Retrovirus Pathogenesis Section, National Cancer Institute-Frederick, Frederick, MD 21702-1201, USA.
Abstract:
The conserved mRNA export receptor NXF1 (Mex67 in yeast) assembles with messenger ribonucleoproteins (mRNP) in the nucleus and guides them through the nuclear pore complex into the cytoplasm. The DEAD family RNA helicase Dbp5 is essential for nuclear export of mRNA and is thought to dissociate Mex67 from mRNP upon translocation, thereby generating directional passage. However, the molecular mechanism by which Dbp5 recognizes Mex67-containing mRNP is not clear. Here we report that the human NXF1-binding protein RBM15 binds specifically to human DBP5 and facilitates its direct contact with mRNA in vivo. We found that RBM15 is targeted to the nuclear envelope, where it colocalizes extensively with DBP5 and NXF1. Gene silencing of RBM15 leads to cytoplasmic depletion and nuclear accumulation of general mRNA as well as individual endogenous transcripts, indicating that RBM15 is required for efficient mRNA export. We propose a model in which RBM15 acts locally at the nuclear pore complex, by facilitating the recognition of NXF1-mRNP complexes by DBP5 during translocation, thereby contributing to efficient mRNA export.
Insights
The protein RBM15 helps the RNA helicase DBP5 interact with messenger RNA (mRNA) export complexes. This interaction is crucial for moving mRNA from the nucleus to the cytoplasm, ensuring proper gene expression.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Messenger RNA (mRNA) export is a fundamental process for gene expression, mediated by the NXF1 receptor.
- The DEAD-box RNA helicase Dbp5 is known to be essential for mRNA export, likely by dissociating export factors from mRNA.
- The precise mechanism by which Dbp5 recognizes mRNA-export complexes remains unclear.
Purpose of the Study:
- To elucidate the molecular mechanism by which Dbp5 recognizes mRNA-export complexes.
- To investigate the role of RBM15 in the interaction between Dbp5 and mRNA export machinery.
Main Methods:
- In vivo binding assays to detect interactions between RBM15, DBP5, and NXF1.
- Immunofluorescence microscopy to determine the subcellular localization of RBM15, DBP5, and NXF1.
- Gene silencing (siRNA) to assess the functional requirement of RBM15 in mRNA export.
- Analysis of mRNA levels in the cytoplasm and nucleus following RBM15 depletion.
Main Results:
- RBM15 specifically binds to human DBP5 and facilitates its direct contact with mRNA in vivo.
- RBM15 localizes to the nuclear envelope and extensively colocalizes with DBP5 and NXF1.
- Silencing of RBM15 results in reduced mRNA levels in the cytoplasm and accumulation in the nucleus.
- RBM15 is essential for the efficient export of both general and specific endogenous mRNA transcripts.
Conclusions:
- RBM15 acts as a crucial adaptor protein at the nuclear pore complex.
- RBM15 facilitates the recognition of NXF1-mRNP complexes by DBP5 during mRNA translocation.
- RBM15 plays a vital role in ensuring directional and efficient mRNA export from the nucleus to the cytoplasm.
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