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Updated: Jun 19, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Genomics, haplotypes and cardiovascular disease
Arun Kalyanasundaram1, Glenn S Gerhard, Kimberly A Skelding
1Geisinger Medical Center, 100 N. Academy Drive, Danville, PA 17822, USA. arunk@geisinger.edu
Insights
Genetic and environmental factors contribute to cardiovascular disease. Advanced genomic tools and data are key to understanding genetic variants and enabling personalized medicine for heart conditions.
Area of Science:
- Genetics
- Cardiology
- Genomics
Background:
- Cardiovascular disease (CVD) arises from complex genetic and environmental interactions.
- Specific genetic mutations are linked to inherited heart conditions like sudden cardiac death and hypertrophic cardiomyopathy.
- Polygenic forms of CVD are increasingly studied using genomic approaches.
Purpose of the Study:
- To explore the genetic underpinnings of cardiovascular diseases.
- To highlight the role of genomic data in identifying disease-associated variants.
- To emphasize the potential of personalized medicine in cardiology.
Main Methods:
- Utilizing haplotype data for genomic mapping of genetic variants.
- Employing genome-wide association studies (GWAS) to identify single nucleotide polymorphisms (SNPs).
- Leveraging high-density microarrays and sequence data.
Main Results:
- Identification of genetic variants linked to common polygenic cardiovascular diseases.
- Application of GWAS in clinical contexts, such as in-stent restenosis.
- Demonstration of the utility of genomic information in understanding disease etiology.
Conclusions:
- Genomic approaches are crucial for dissecting the complex origins of cardiovascular disease.
- The integration of high-throughput genomic tools, data, and precise phenotyping is essential for personalized cardiovascular medicine.
- Future research directions involve further application of these tools to diverse cardiovascular conditions.
Abstract:
Cardiovascular disease has a complex genetic and environmental origin. Single-gene mutations have been identified for a variety of disorders, including several forms of sudden cardiac death, atrial fibrillation, hypertrophic cardiomyopathy and coronary artery disease. The recent availability of haplotype data has further enabled genomic approaches to mapping genetic variants associated with the more common polygenic forms of cardiovascular disease. Genome-wide association studies have identified single nucleotide polymorphisms associated with coronary artery disease and are being applied to a variety of clinical problems such as in-stent restenosis. The combination of high-throughput genomic tools such as high density microarrays, genomic information such as sequence and haplotype data, and the careful clinical definition of phenotypes provides the framework for realizing the goals of personalized medicine.
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