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Updated: Jun 19, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Genetics of congenital long QT syndrome and Brugada syndrome
1National Cardiovascular Center, Division of Cardiology, Department of Internal Medicine, 5-7-1 Fujishiro-dai, Suita, Osaka, 565-8565 Japan. wshimizu@hsp.ncvc.go.jp
Insights
Inherited cardiac arrhythmias stem from gene mutations affecting ion channels. Research focuses on Long QT Syndrome (LQTS) and Brugada syndrome, with detailed genotype-phenotype data for LQTS types 1-3.
Area of Science:
- Cardiology
- Genetics
- Molecular Biology
Background:
- Inherited cardiac arrhythmias, including Long QT Syndrome (LQTS) and Brugada syndrome, are linked to mutations in genes encoding ion channels and membrane proteins.
- Eleven congenital LQTS forms are known, caused by mutations in potassium, sodium, and calcium channel genes or membrane adapter genes.
Purpose of the Study:
- To investigate genotype-phenotype correlations in inherited cardiac arrhythmias.
- To summarize current knowledge on genetic causes and relationships between genetic mutations and clinical presentation in LQTS and Brugada syndrome.
Main Methods:
- Review of existing literature on inherited cardiac arrhythmias.
- Analysis of genotype-phenotype data, particularly for LQTS types 1, 2, and 3.
- Comparison of data availability for LQTS versus Brugada syndrome.
Main Results:
- Genotype-phenotype correlations are well-established for LQT1, LQT2, and LQT3, accounting for over 90% of genotyped LQTS patients.
- Causative mutations are less frequently identified in Brugada syndrome patients.
- Data on genotype-phenotype relationships in Brugada syndrome remain limited compared to LQTS.
Conclusions:
- Genetic mutations in ion channels are the primary cause of inherited cardiac arrhythmias like LQTS and Brugada syndrome.
- Detailed genotype-phenotype understanding exists for major LQTS subtypes, facilitating clinical management.
- Further research is needed to elucidate genotype-phenotype relationships in Brugada syndrome due to limited causative mutation identification.
Abstract:
The inherited cardiac arrhythmias including congenital and acquired long QT syndrome (LQTS), Brugada syndrome, progressive cardiac conduction defect, catecholaminergic polymorphic ventricular tachycardia, arrhythmogenic right ventricular cardiomyopathy, familial atrial fibrillation, familial sick sinus syndrome and short QT syndrome, are linked to mutations in genes encoding for ion channels or other membrane components. Eleven forms of congenital LQTS have been identified and these are caused by mutations in genes of the potassium, sodium and calcium channels or membrane adapter. Genotype-phenotype correlations have been rigorously investigated, especially in the LQT1, LQT2 and LQT3 forms, which constitute more than 90% of genotyped patients. On the other hand, causative mutations were identified much less in patients with Brugada syndrome, therefore data on genotype-phenotype relationships are limited.
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