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MethMarker: user-friendly design and optimization of gene-specific DNA methylation assays

Peter Schüffler1, Thomas Mikeska, Andreas Waha

  • 1Max-Planck-Institut für Informatik, Saarbrücken, Germany. schueffi@mpi-inf.mpg.de

Genome Biology
|October 7, 2009
PubMed

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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...