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Updated: Jun 19, 2026

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Gut Isolation from Zebrafish Larvae for Single-cell RNA Sequencing
Published on: November 10, 2023
miR-145 directs intestinal maturation in zebrafish
Lei Zeng1, Alyson D Carter, Sarah J Childs
1Biochemistry and Molecular Biology, and Smooth Muscle Research Group, University of Calgary, Calgary, AB, Canada T2N 4N1.
Summary
MicroRNA miR-145 is crucial for zebrafish gut development, regulating both smooth muscle and epithelial maturation. It controls GATA6 expression, impacting gut function and differentiation.
Area of Science:
- Developmental Biology
- Molecular Biology
- Genetics
Background:
- Embryonic gut development requires precise differentiation of smooth muscle and epithelial layers for proper function.
- The specific roles of microRNAs in regulating gut smooth muscle and epithelial differentiation remain largely uncharacterized.
Purpose of the Study:
- To investigate the role of microRNA miR-145 in the development and maturation of the embryonic zebrafish gut.
- To identify the molecular targets and mechanisms by which miR-145 influences gut differentiation.
Main Methods:
- Analysis of miR-145 expression patterns in zebrafish embryonic gut.
- Functional studies involving modulation of miR-145 levels (loss and gain of function).
- Assessment of gut smooth muscle and epithelial markers, nitric oxide production, and alkaline phosphatase activity.
- In vitro and in vivo validation of miR-145 targeting of GATA6.
Main Results:
- miR-145 is highly expressed in zebrafish gut smooth muscle and is essential for its proper development.
- Altering miR-145 levels leads to defects in both smooth muscle (e.g., reduced nitric oxide, altered marker expression) and epithelial maturation (e.g., immature morphology, loss of alkaline phosphatase).
- miR-145 directly represses the transcription factor GATA6, identifying it as a key target regulating gut development.
Conclusions:
- miR-145 is a critical regulator of embryonic gut maturation in zebrafish, impacting both smooth muscle and epithelial layers.
- The mechanism involves miR-145-mediated repression of GATA6, highlighting a conserved pathway in gut development.

