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Updated: Jun 19, 2026

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
Published on: June 28, 2018
Synergistic interplay between promoter recognition and CBP/p300 coactivator recruitment by FOXO3a
Feng Wang1, Christopher B Marshall, Guang-Yao Li
1Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada M5G 2M9.
Abstract:
FOXO3a is a transcription factor belonging to the forkhead box O-Class (FOXO) subfamily, and it regulates metabolism, cell-cycle arrest, cell differentiation, and apoptosis through activating or suppressing gene transcription. FOXO3a contains a well-folded DNA-binding forkhead (FH) domain, but a large portion of the remaining protein sequence (75% of the total) is predicted to comprise intrinsically disordered regions (IDRs). Within the IDRs, there are three conserved regions (CR1-CR3), and it has been shown that CR3 (residues D610-N650) is a transactivation domain that recruits the coactivator histone acetyltransferase (HAT) CBP/p300, through binding to its KIX domain. In a previous study, we determined the solution structure of the FH domain and identified an intramolecular interaction between FH and CR3 domains of FOXO3a. Here we illustrate that the KIX domain of CBP interacts with the central core region (L620-A635) of CR3, which also internally interacts with the FH domain. In this heterotypic interplay, FH prevents CR3 from binding to KIX; however, upon binding to the Forkhead response element (FRE) DNA, the FH domain releases the CR3 domain, allowing it to interact with KIX. While previous studies have shown that the transactivation domains of c-Myb and MLL bind to distinct sites on KIX, our results indicate that FOXO3a CR3 has an ability to bind to both of these sites. These results suggest a model of FOXO3a-dependent coactivator recruitment in which the dynamic interplay between KIX and FH domains for binding to CR3 plays a key regulatory role in gene transcription activation.
Insights
The transcription factor FOXO3a
Area of Science:
- Molecular Biology
- Gene Regulation
- Protein Structure and Dynamics
Background:
- FOXO3a is a transcription factor regulating key cellular processes.
- It possesses a DNA-binding forkhead (FH) domain and intrinsically disordered regions (IDRs).
- The CR3 region of FOXO3a acts as a transactivation domain, recruiting coactivators like CBP/p300.
Purpose of the Study:
- To elucidate the interaction mechanism between FOXO3a, its coactivator CBP/p300, and DNA.
- To understand the role of intramolecular interactions in regulating FOXO3a's transcriptional activity.
- To characterize the binding interface of FOXO3a's CR3 domain with the KIX domain of CBP.
Main Methods:
- Solution structure determination of the FH domain.
- Analysis of intramolecular interactions between FH and CR3 domains.
- Investigation of CBP KIX domain binding to FOXO3a CR3 and its regulation by FH domain and DNA.
Main Results:
- The KIX domain of CBP binds to the central core region of FOXO3a's CR3 domain.
- An intramolecular interaction between the FH and CR3 domains of FOXO3a inhibits KIX binding.
- Upon DNA binding, the FH domain releases CR3, enabling coactivator recruitment.
- FOXO3a CR3 binds to KIX at sites overlapping those used by other transcription factors.
Conclusions:
- A dynamic interplay between the FH and CR3 domains of FOXO3a regulates coactivator recruitment.
- This interplay is crucial for activating gene transcription in a FOXO3a-dependent manner.
- FOXO3a exhibits a unique binding mode to the KIX domain, accommodating multiple binding sites.
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