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Updated: Jun 19, 2026

Quantitative Detection of DNA-Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
Regulation of protein Citrullination through p53/PADI4 network in DNA damage response
Chizu Tanikawa1, Koji Ueda, Hidewaki Nakagawa
1Laboratory of Molecular Medicine, Human Genome Center, Division of Gene Expression and Regulation, Institute of Medical Science, the University of Tokyo, Japan.
Abstract:
Upon a wide range of cellular stresses, p53 is activated and inhibits malignant transformation through the transcriptional regulation of its target genes related to apoptosis, cell cycle arrest, and DNA repair. However, its involvement in posttranslational modifications of proteins has not yet been well characterized. Here, we report the novel role of p53 in the regulation of protein citrullination. p53 transactivated peptidylarginine deiminase type 4 (PADI4) through an intronic p53-binding site. The PADI4 gene encodes an enzyme catalyzing the citrullination of arginine residues in proteins, and ectopic expression of p53 or PADI4 induced protein citrullination. In addition, various proteins were citrullinated in response to DNA damage, but knockdown of PADI4 or p53 remarkably inhibited their citrullination, indicating the regulation of protein citrullination in a p53/PADI4-dependent manner. We found that PADI4 citrullinated the histone chaperone protein, nucleophosmin (NPM1), at the arginine 197 residue in vivo under physiologic conditions. Citrullination of NPM1 by PADI4 resulted in its translocation from the nucleoli to the nucleoplasm, whereas PADI4 did not alter the localization of mutant NPM1 (R197K). Furthermore, ectopic expression of PADI4 inhibited tumor cell growth, and concordantly, the knockdown of PADI4 attenuated p53-mediated growth-inhibitory activity, demonstrating the significance of PADI4-mediated protein citrullination in the p53 signaling pathway
Insights
The tumor suppressor p53 regulates protein citrullination by activating peptidylarginine deiminase type 4 (PADI4). This p53/PADI4 pathway influences protein localization and inhibits tumor cell growth.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- The tumor suppressor p53 is crucial for inhibiting malignant transformation via transcriptional regulation of target genes.
- The role of p53 in protein posttranslational modifications, specifically citrullination, remains largely uncharacterized.
Purpose of the Study:
- To investigate the novel role of p53 in regulating protein citrullination.
- To elucidate the mechanism by which p53 influences citrullination and its impact on cellular processes.
Main Methods:
- Assessed p53-mediated transactivation of peptidylarginine deiminase type 4 (PADI4) using p53-binding site analysis.
- Utilized ectopic expression and knockdown experiments to evaluate the impact of p53 and PADI4 on protein citrullination.
- Investigated the citrullination of nucleophosmin (NPM1) by PADI4 in vivo and its effect on protein localization.
Main Results:
- p53 directly transactivates PADI4, an enzyme that catalyzes protein citrullination.
- p53 and PADI4 are essential for DNA damage-induced protein citrullination, demonstrating a p53/PADI4-dependent regulation.
- PADI4 citrullinates NPM1 at arginine 197, causing its translocation from nucleoli to nucleoplasm.
- PADI4 expression inhibits tumor cell growth, and PADI4 knockdown attenuates p53-mediated growth inhibition.
Conclusions:
- p53 plays a novel role in regulating protein citrullination through the PADI4 pathway.
- PADI4-mediated citrullination of NPM1 is a key event in the p53 signaling pathway, impacting cellular localization and tumor growth.
- This study highlights the significance of protein citrullination in p53-dependent tumor suppression.
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