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Updated: Jun 19, 2026

Manipulation and Analysis of Cell Cycle-Dependent Processes in Budding Yeast
Published on: September 26, 2025
DNA damage checkpoint maintains CDH1 in an active state to inhibit anaphase progression
Tao Zhang1, Saurabh Nirantar, Hong Hwa Lim
1Institute of Molecular and Cell Biology, A*STAR (Agency for Science, Technology and Research) 61, Biopolis Drive, Proteos, Singapore 138673.
Abstract:
DNA damage checkpoint prevents segregation of damaged chromosomes by imposing cell-cycle arrest. In budding yeast, Mec1, Chk1, and Rad53 (homologous to human ATM/ATR, Chk1, and Chk2 kinases, respectively) are among the main effectors of this pathway. The DNA damage checkpoint is thought to inhibit chromosome segregation by preventing separase-mediated cleavage of cohesins. Here, we describe a regulatory network that prevents segregation of damaged chromosomes by restricting spindle elongation and acts in parallel with inhibition of cohesin cleavage. This control circuit involves Rad53, polo kinase, the anaphase-promoting complex activator Cdh1, and the bimC kinesin family proteins Cin8 and Kip1. The inhibition of polo kinase by Rad53-dependent phosphorylation prevents it from inactivating Cdh1. As a result, Cdh1 remains in a partially active state and limits Cin8 and Kip1 accumulation, thereby restraining spindle elongation. Hence, the DNA damage checkpoint suppresses both cohesin cleavage and spindle elongation to preserve chromosome stability.
Insights
The DNA damage checkpoint prevents chromosome segregation by arresting cell division. This study reveals a parallel pathway involving Rad53, polo kinase, Cdh1, and kinesins that restricts spindle elongation to maintain chromosome stability.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- The DNA damage checkpoint is crucial for preventing the segregation of damaged chromosomes, typically by inducing cell-cycle arrest.
- Key effectors in budding yeast include Mec1, Chk1, and Rad53, homologous to human ATM/ATR, Chk1, and Chk2 kinases.
- It is understood that the checkpoint inhibits chromosome segregation by blocking separase-mediated cohesin cleavage.
Purpose of the Study:
- To elucidate a regulatory network that prevents chromosome segregation upon DNA damage.
- To investigate a mechanism acting in parallel to cohesin cleavage inhibition.
- To identify the components involved in restricting spindle elongation during DNA damage response.
Main Methods:
- Investigated the roles of Rad53, polo kinase, Cdh1, and bimC kinesin family proteins (Cin8, Kip1) in budding yeast.
- Analyzed the regulatory interactions, including Rad53-dependent phosphorylation of polo kinase.
- Assessed the impact on Cdh1 activity and its regulation of kinesin accumulation and spindle elongation.
Main Results:
- Identified a regulatory circuit involving Rad53, polo kinase, Cdh1, Cin8, and Kip1 that restricts spindle elongation.
- Demonstrated that Rad53-dependent phosphorylation inhibits polo kinase, preventing Cdh1 inactivation.
- Showed that sustained partial Cdh1 activity limits Cin8 and Kip1 accumulation, thereby restraining spindle elongation.
Conclusions:
- The DNA damage checkpoint employs a dual strategy to preserve chromosome stability: inhibiting cohesin cleavage and restricting spindle elongation.
- This parallel regulatory network ensures proper chromosome segregation by controlling spindle dynamics.
- The findings highlight a novel mechanism by which the DNA damage checkpoint maintains genomic integrity.
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