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Isolation of mRNAs Associated with Yeast Mitochondria to Study Mechanisms of Localized Translation
Published on: March 14, 2014
Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner
Erez Eliyahu1, Lilach Pnueli, Daniel Melamed
1Department of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Abstract:
mRNAs encoding mitochondrial proteins are enriched in the vicinity of mitochondria, presumably to facilitate protein transport. A possible mechanism for enrichment may involve interaction of the translocase of the mitochondrial outer membrane (TOM) complex with the precursor protein while it is translated, thereby leading to association of polysomal mRNAs with mitochondria. To test this hypothesis, we isolated mitochondrial fractions from yeast cells lacking the major import receptor, Tom20, and compared their mRNA repertoire to that of wild-type cells by DNA microarrays. Most mRNAs encoding mitochondrial proteins were less associated with mitochondria, yet the extent of decrease varied among genes. Analysis of several mRNAs revealed that optimal association of Tom20 target mRNAs requires both translating ribosomes and features within the encoded mitochondrial targeting signal. Recently, Puf3p was implicated in the association of mRNAs with mitochondria through interaction with untranslated regions. We therefore constructed a tom20 Delta puf3 Delta double-knockout strain, which demonstrated growth defects under conditions where fully functional mitochondria are required. Mislocalization effects for few tested mRNAs appeared stronger in the double knockout than in the tom20 Delta strain. Taken together, our data reveal a large-scale mRNA association mode that involves interaction of Tom20p with the translated mitochondrial targeting sequence and may be assisted by Puf3p.
Insights
Mitochondrial protein mRNA localization to mitochondria is facilitated by the translocase of the outer membrane (TOM) complex, specifically Tom20p, and potentially Puf3p. This interaction ensures efficient mitochondrial protein transport.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- Messenger RNAs (mRNAs) encoding mitochondrial proteins are found near mitochondria, likely for efficient protein transport.
- The translocase of the mitochondrial outer membrane (TOM) complex is a potential mediator of this mRNA localization during translation.
Purpose of the Study:
- To investigate the role of the major mitochondrial import receptor, Tom20, in the association of mRNAs with mitochondria.
- To explore the combined roles of Tom20 and Puf3p in mRNA localization and mitochondrial function.
Main Methods:
- Isolated mitochondrial fractions from yeast cells lacking Tom20 (tom20 Δ) and wild-type cells.
- Compared mRNA repertoires using DNA microarrays.
- Constructed and analyzed a tom20 Δ puf3 Δ double-knockout strain.
Main Results:
- Most mitochondrial protein mRNAs showed reduced association with mitochondria in tom20 Δ cells, with varying degrees of decrease.
- Optimal association of Tom20 target mRNAs requires both translating ribosomes and the mitochondrial targeting signal.
- The tom20 Δ puf3 Δ double-knockout strain exhibited growth defects, and some mRNA mislocalization effects were more pronounced than in the tom20 Δ strain.
Conclusions:
- Tom20p interacts with translated mitochondrial targeting sequences to mediate mRNA association with mitochondria.
- Puf3p may assist Tom20p in this mRNA localization process.
- This study reveals a mechanism for large-scale mRNA association with mitochondria involving Tom20p and potentially Puf3p.
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