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Published on: September 19, 2018
Proteomics, pathway array and signaling network-based medicine in cancer
David Y Zhang1, Fei Ye, Ling Gao
1Department of Pathology, Mount Sinai School of Medicine, New York, NY, USA. david.zhang@mssm.edu.
Abstract:
Cancer is a multifaceted disease that results from dysregulated normal cellular signaling networks caused by genetic, genomic and epigenetic alterations at cell or tissue levels. Uncovering the underlying protein signaling network changes, including cell cycle gene networks in cancer, aids in understanding the molecular mechanism of carcinogenesis and identifies the characteristic signaling network signatures unique for different cancers and specific cancer subtypes. The identified signatures can be used for cancer diagnosis, prognosis, and personalized treatment. During the past several decades, the available technology to study signaling networks has significantly evolved to include such platforms as genomic microarray (expression array, SNP array, CGH array, etc.) and proteomic analysis, which globally assesses genetic, epigenetic, and proteomic alterations in cancer. In this review, we compared Pathway Array analysis with other proteomic approaches in analyzing protein network involved in cancer and its utility serving as cancer biomarkers in diagnosis, prognosis and therapeutic target identification. With the advent of bioinformatics, constructing high complexity signaling networks is possible. As the use of signaling network-based cancer diagnosis, prognosis and treatment is anticipated in the near future, medical and scientific communities should be prepared to apply these techniques to further enhance personalized medicine.
Insights
Identifying cancer
Area of Science:
- Oncology
- Bioinformatics
- Molecular Biology
Background:
- Cancer arises from disrupted cellular signaling networks due to genetic and epigenetic changes.
- Understanding these molecular alterations is key to cancer mechanism and personalized medicine.
- Technological advancements enable global assessment of genetic, epigenetic, and proteomic changes in cancer.
Purpose of the Study:
- To review and compare Pathway Array analysis with other proteomic methods for cancer signaling network analysis.
- To highlight the utility of signaling network signatures as cancer biomarkers for diagnosis, prognosis, and therapy.
- To emphasize the growing role of bioinformatics in constructing complex signaling networks for clinical applications.
Main Methods:
- Review of existing literature on proteomic approaches for cancer signaling network analysis.
- Comparison of Pathway Array analysis with other proteomic techniques.
- Discussion of bioinformatics tools for network construction and analysis.
Main Results:
- Pathway Array analysis offers a valuable approach for studying cancer protein networks.
- Signaling network signatures can serve as effective biomarkers for cancer diagnosis, prognosis, and therapeutic targeting.
- Bioinformatics facilitates the construction of intricate signaling networks essential for future personalized medicine.
Conclusions:
- Pathway Array analysis is a powerful tool for dissecting cancer signaling pathways.
- Network-based signatures hold significant promise for advancing personalized cancer care.
- The integration of bioinformatics and network analysis is crucial for future cancer research and treatment.
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