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Related Experiment Video

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Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Published on: May 9, 2017

The integrated microbial genomes system: an expanding comparative analysis resource.

Victor M Markowitz¹, I-Min A Chen, Krishna Palaniappan

¹Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, USA. VMMarkowitz@lbl.gov

Nucleic Acids Research

|October 30, 2009

Summary

This summary is machine-generated.

The Integrated Microbial Genomes (IMG) system offers a comprehensive resource for comparing microbial genomes from all life domains. It provides tools for analyzing gene and genome annotations, continuously updated since 2005.

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Area of Science:

Microbiology
Bioinformatics
Genomics

Background:

The Integrated Microbial Genomes (IMG) system is a vital resource for comparative genomics.
It aggregates publicly available microbial genomes, plasmids, and viruses from all domains of life.

Purpose of the Study:

To provide a continuously updated, integrated platform for comparative analysis of microbial genomic data.
To offer tools and viewers for examining gene and genome annotations in a comparative context.

Main Methods:

Integration of draft and complete microbial genomes from public databases.
Development and regular release of enhanced data content and analytical capabilities.
Establishment of domain-specific companion systems for specialized analyses, such as expert genome annotation review.

Main Results:

IMG hosts a vast collection of integrated microbial genomes, plasmids, and viruses.
The system facilitates comparative analysis through integrated data and analytical tools.
Regular updates ensure expanded data content and improved analytical functionalities.

Conclusions:

The IMG system is a valuable and evolving community resource for microbial genomics research.
Its comprehensive integration and analytical tools support in-depth comparative genome studies.
Ongoing development ensures its continued relevance for exploring microbial diversity and function.