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Related Concept Videos

RNA-seq03:21

RNA-seq

RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Types of RNA01:23

Types of RNA

Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Experimental RNAi02:15

Experimental RNAi

RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
RNA Structure01:23

RNA Structure

Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
Riboswitches01:56

Riboswitches

Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...

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RNA Interference in Aquatic Beetles as a Powerful Tool for Manipulating Gene Expression at Specific Developmental Time Points
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Model systems: how chemical biologists study RNA.

Andro C Rios1, Yitzhak Tor

  • 1Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0358, USA.

Current Opinion in Chemical Biology
|November 3, 2009
PubMed
Summary

Exploring RNA

Area of Science:

  • Biochemistry and Molecular Biology
  • Evolutionary Biology
  • Genetics

Background:

  • Ribonucleic acids (RNAs) are complex biomolecules with diverse structural and functional roles.
  • Functional noncoding RNAs, including microRNAs (miRNAs), riboswitches, and ribozymes, have expanded our understanding of RNA's biological functions and catalytic capabilities.
  • Model systems, often using truncated or modified RNA sequences, are crucial for studying these complex molecules.

Purpose of the Study:

  • To review the advancements in RNA catalytic model systems.
  • To highlight the refined understanding of the hammerhead ribozyme.
  • To discuss the emerging models for the spliceosome and their implications for RNA biology.

Main Methods:

  • Analysis of recent research on RNA catalytic models.

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  • Molecular modeling and structural analysis of ribozymes.
  • Integration of experimental data to refine existing models.
  • Main Results:

    • New data offer a clearer molecular understanding of the hammerhead ribozyme's catalytic activity.
    • Emerging models for the spliceosome provide insights into its structure and function.
    • Catalytic RNA models are being developed and refined.

    Conclusions:

    • Advanced RNA models enhance our comprehension of RNA's catalytic potential and biological roles.
    • These models serve as valuable tools for investigating the RNA world hypothesis and the origins of life.
    • Further development of models like the spliceosome is needed to solidify their utility.