Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: Jun 19, 2026

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq
10:23

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq

Published on: February 26, 2015

Xenbase: gene expression and improved integration.

Jeff B Bowes1, Kevin A Snyder, Erik Segerdell

  • 1Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada. bowes@ucalgary.ca

Nucleic Acids Research
|November 4, 2009
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Vertebrate endoderm development.

Development (Cambridge, England)·2026
Same author

A stage and anatomy ontology for embryogenesis in indirect-developing echinoderms.

Development (Cambridge, England)·2026
Same author

Single-cell transcriptomic comparison of the developing human fetal stomach and pluripotent stem cell-derived gastric organoids.

Development (Cambridge, England)·2026
Same author

Computer prediction and genetic analysis identifies retinoic acid modulation as a driver of conserved longevity pathways in genetically diverse <i>Caenorhabditis</i> nematodes.

eLife·2025
Same author

Xenbase: 25 years of integrating molecular and biomedical data from Xenopus.

Genetics·2025
Same author

Computer prediction and genetic analysis identifies retinoic acid modulation as a driver of conserved longevity pathways in genetically-diverse <i>Caenorhabditis</i> nematodes.

bioRxiv : the preprint server for biology·2025
Same journal

Correction to 'New origin firing is inhibited by APC/CCdh1 activation in S-phase after severe replication stress'.

Nucleic acids research·2026
Same journal

VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.

Nucleic acids research·2026
Same journal

Accessibility of telomeric overhangs to stabilizing small-molecule ligands.

Nucleic acids research·2026
Same journal

Multivalent interactions mediate SNAIL transcription factor stimulation of the nucleosome deacetylase activity of the CoREST complex.

Nucleic acids research·2026
Same journal

Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions and transcription start sites.

Nucleic acids research·2026
Same journal

Correction to 'The Gene Ontology knowledgebase in 2026'.

Nucleic acids research·2026
See all related articles

Xenbase, a Xenopus model organism database, now offers enhanced gene expression data, literature integration, and a stock center. These updates improve access to genomic and developmental information for Xenopus research.

Area of Science:

  • Developmental Biology
  • Genomics
  • Bioinformatics

Background:

  • Xenopus laevis and Xenopus tropicalis are crucial model organisms in biological research.
  • Centralized, up-to-date resources are essential for managing and accessing complex genomic and developmental data.
  • The Xenopus research community requires integrated information for efficient study.

Purpose of the Study:

  • To describe recent enhancements to Xenbase, the primary model organism database for Xenopus.
  • To highlight new features for accessing gene expression, literature, and community data.
  • To improve the usability and comprehensiveness of the Xenopus research resource.

Main Methods:

  • Integration of new data types including gene expression patterns and image data.

More Related Videos

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression
08:54

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression

Published on: March 29, 2019

Functional Cloning Using a Xenopus Oocyte Expression System
09:40

Functional Cloning Using a Xenopus Oocyte Expression System

Published on: January 30, 2016

Related Experiment Videos

Last Updated: Jun 19, 2026

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq
10:23

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq

Published on: February 26, 2015

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression
08:54

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression

Published on: March 29, 2019

Functional Cloning Using a Xenopus Oocyte Expression System
09:40

Functional Cloning Using a Xenopus Oocyte Expression System

Published on: January 30, 2016

  • Development of new user interfaces for searching and browsing data, such as expression search and interaction tabs.
  • Expansion of the gene catalog and incorporation of community-submitted data.

    • Main Results:

    • Addition of literature and interaction tabs to gene catalog pages.
    • Implementation of a gene expression section with integrated image data and a dedicated search interface.
    • Growth of the gene catalog to over 15,000 genes.
    • Inclusion of a stock center section through collaboration with the European Xenopus Research Center (EXRC).

    Conclusions:

    • Xenbase provides a significantly enhanced and comprehensive resource for Xenopus research.
    • Improved data integration and search functionalities streamline access to genomic, developmental, and community information.
    • Xenbase continues to be the central hub for Xenopus gene nomenclature and anatomical ontology.