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Updated: Jun 18, 2026

Screening for Amyloid Aggregation by Semi-Denaturing Detergent-Agarose Gel Electrophoresis
Published on: July 16, 2008
Amyloid fibrils of human prion protein are spun and woven from morphologically disordered aggregates
Karin Almstedt1, Sofie Nyström, K Peter R Nilsson
1IFM-Department of Chemistry, Linköping University, Linköping, Sweden.
Abstract:
Propagation and infectivity of prions in human prionopathies are likely associated with conversion of the mainly alpha-helical human prion protein, HuPrP, into an aggregated form with amyloid-like properties. Previous reports on efficient conversion of recombinant HuPrP have used mild to harsh denaturing conditions to generate amyloid fibrils in vitro. Herein we report on the in vitro conversion of four forms of truncated HuPrP (sequences 90-231 and 121-231 with and without an N-terminal hexa histidine tag) into amyloid-like fibrils within a few hours by using a protocol (phosphate buffered saline solutions at neutral pH with intense agitation) close to physiological conditions. The conversion process monitored by thioflavin T, ThT, revealed a three stage process with lag, growth and equilibrium phases. Seeding with preformed fibrils shortened the lag phase demonstrating the classic nucleated polymerization mechanism for the reaction. Interestingly, comparing thioflavin T kinetics with solubility and turbidity kinetics it was found that the protein initially formed nonthioflavionophilic, morphologically disordered aggregates that over time matured into amyloid fibrils. By transmission electron microscopy and by fluorescence microscopy of aggregates stained with luminescent conjugated polythiophenes (LCPs); we demonstrated that HuPrP undergoes a conformational conversion where spun and woven fibrils protruded from morphologically disordered aggregates. The initial aggregation functioned as a kinetic trap that decelerated nucleation into a fibrillation competent nucleus, but at the same time without aggregation there was no onset of amyloid fibril formation. The agitation, which was necessary for fibril formation to be induced, transiently exposes the protein to the air-water interface suggests a hitherto largely unexplored denaturing environment for prion conversion.
Insights
This study demonstrates a new method for converting human prion protein (HuPrP) into amyloid-like fibrils under near-physiological conditions. This research advances understanding of prion disease mechanisms and potential therapeutic targets.
Area of Science:
- Biochemistry
- Neuroscience
- Prion Biology
Background:
- Prion diseases involve the conversion of human prion protein (HuPrP) into aggregated, amyloid-like forms.
- Previous in vitro studies required harsh denaturing conditions for HuPrP conversion.
- Understanding prion conversion is crucial for developing treatments for human prionopathies.
Purpose of the Study:
- To investigate the in vitro conversion of truncated HuPrP into amyloid-like fibrils under near-physiological conditions.
- To elucidate the mechanism and kinetics of HuPrP fibrillation.
- To explore the role of initial aggregate formation in prion conversion.
Main Methods:
- In vitro conversion of four truncated HuPrP variants (90-231 and 121-231, with/without His-tag) using phosphate-buffered saline and intense agitation.
- Monitoring conversion kinetics using Thioflavin T (ThT) fluorescence, solubility, and turbidity assays.
- Characterization of aggregate morphology using transmission electron microscopy (TEM) and fluorescence microscopy with luminescent conjugated polythiophenes (LCPs).
Main Results:
- HuPrP was converted into amyloid-like fibrils within hours under mild, near-physiological conditions.
- The conversion followed a three-stage process (lag, growth, equilibrium) and a nucleated polymerization mechanism, evidenced by seeding experiments.
- Initial disordered aggregates preceded mature amyloid fibrils, acting as a kinetic trap that was essential for fibrillation onset.
Conclusions:
- A novel, efficient method for generating HuPrP amyloid fibrils under near-physiological conditions was established.
- The study identified a crucial role for initial, disordered aggregation in the nucleation of amyloid fibril formation.
- Protein agitation at the air-water interface may represent a significant, previously underappreciated denaturing environment for prion conversion.
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