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Updated: Jun 18, 2026

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Association of IL-1 gene complex members with ankylosing spondylitis in Chinese Han population
1Department of Rheumatology, Third affiliated Hospital of Sun Yat-sen University, Guangzhou, China.
Insights
Genetic variations in the IL-1 gene cluster are linked to ankylosing spondylitis (AS) in the Chinese Han population. Specific polymorphisms and haplotypes show significant associations with AS risk and clinical features.
Area of Science:
- Immunogenetics
- Rheumatology
- Human Genetics
Background:
- Ankylosing spondylitis (AS) is a chronic inflammatory disease with reported associations to IL-1 complex gene polymorphisms, but findings vary across populations.
- Few studies have explored the link between IL-1 gene variations and the clinical manifestations of AS.
Purpose of the Study:
- To investigate the association between IL-1 gene cluster polymorphisms and AS in the Chinese Han population.
- To examine the relationship between these genetic variations and the clinical symptoms of AS patients.
Main Methods:
- Genotyping of five single nucleotide polymorphisms (SNPs) and one IL1RN variable number tandem repeat (VNTR) in the IL-1 gene cluster.
- Comparison of allele, genotype, and haplotype frequencies between AS patients and healthy controls using SHEsis software.
- Analysis of linkage disequilibrium and haplotype associations with AS.
Main Results:
- The allele C of the IL1F10.3 marker was significantly more frequent in AS patients (p = 0.001, OR = 1.54).
- Strong linkage disequilibrium was observed between IL1B-511, IL1B+3953, and RN4.
- Specific haplotypes, including IL1B-511-T/IL1B+3953-C/IL1F10.3-C/RN4-T/IL1RN.VNTR-1/IL1RN6.1-C, showed a strong association with AS (p = 3.32 x 10(-5), OR = 4.41).
- A weak association was found between the IL1RN.VNTR A2 allele and peripheral arthritis risk (OR = 0.2).
Conclusions:
- The IL-1 gene cluster is significantly associated with ankylosing spondylitis in the Chinese population.
- These findings support previous research and highlight potential genetic factors influencing AS clinical presentation.
- Further research may elucidate the specific roles of these genetic variants in AS pathogenesis and clinical outcomes.
Abstract:
There are reports of IL-1 complex gene polymorphisms in ankylosing spondylitis (AS; MIM 106300), but the results have been inconsistent among populations. Moreover, few studies examine the association between IL-1 complex gene polymorphisms and clinical symptoms of AS patients. We investigated polymorphisms of IL-1 complex with AS in the Chinese Han population in this study. Chinese Han AS patients and ethnically matched healthy controls were genotyped for five single nucleotide polymorphisms (IL1beta+3953, beta-511, F10.3, RN.4, RN.6/1) and the IL1RN.VNTR of IL-1 gene cluster. Allele, Genotype and haplotype frequencies were compared between cases and controls by SHEsis software. The frequency of allele C of the marker IL1F10.3 was significantly increased in AS patients versus controls [p = 0.001, odds ratio (OR) = 1.54, 95% confidence interval (CI) = 1.19-1.20; p = 0.002, respectively]. Strong linkage disequilibrium was identified between IL1B-511, IL1B+3953 and RN4 in both patients and healthy controls (D' > 0.95). Haplotypes of pairs of these markers (6) were also significantly associated with AS. The strongest associations observed was between allele combination B-511-T/B+3953-C/F10.3-C/RN4-T/RN2VNTR-1/RN6.1-C and AS (p = 3.32 x 10(-5), OR = 4.41, 95% CI=2.1-9.3). Clinical manifestation showed week association between RN2VNTR A2 allele and risk of peripheral arthritis (OR = 0.2, 95% CI = 0.07-0.91). The IL-1 gene cluster is associated with AS in Chinese population. This finding provides strong statistical support for the previously observed relationship and indicates possible association between clinical manifestation and genetic factor.
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