Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Reduced inflammatory and Th1 transcriptional profiles in geriatric versus adult cotton rats infected with respiratory syncytial virus.

PLoS pathogens·2026
Same author

Interfacial Microenvironment Effects on the Mechanism of Photocatalytic Methanol Conversion for Hydrogen Evolution.

The journal of physical chemistry letters·2026
Same author

Crab Shell Inspired Chitin/β-Tricalcium Phosphate Screws as Orthopedic Implants.

Biomacromolecules·2026
Same author

Biomaterial-Integrated Electroporation for Therapeutic Delivery: From Gene Editing to Tumor Ablation and Immune Modulation.

Small (Weinheim an der Bergstrasse, Germany)·2026
Same author

Molecular Transformation of Dissolved Organic Matter at the Coal-Water Interface: Insights from High-Resolution Mass Spectrometry.

ACS omega·2026
Same author

Supramolecular self-assembled polyphenol nanoparticles alleviate osteoarthritis by inhibiting chondrocyte ferroptosis.

Materials today. Bio·2026

Related Experiment Video

Updated: Jun 18, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
09:37

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains.

Keiko Akagi1, Robert M Stephens, Jingfeng Li

  • 1Mouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.

Nucleic Acids Research
|November 26, 2009
PubMed
Summary

MouseIndelDB offers a new database of thousands of mouse genomic insertion and deletion (indel) polymorphisms. This resource aids research in mammalian genetics, genomics, and evolutionary biology.

More Related Videos

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
06:41

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila

Published on: August 20, 2019

Improved Genome Editing via Oviductal Nucleic Acids Delivery-based In Vivo Electroporation Technique for Knockout Mice Generation
09:56

Improved Genome Editing via Oviductal Nucleic Acids Delivery-based In Vivo Electroporation Technique for Knockout Mice Generation

Published on: August 26, 2025

Related Experiment Videos

Last Updated: Jun 18, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
09:37

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
06:41

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila

Published on: August 20, 2019

Improved Genome Editing via Oviductal Nucleic Acids Delivery-based In Vivo Electroporation Technique for Knockout Mice Generation
09:56

Improved Genome Editing via Oviductal Nucleic Acids Delivery-based In Vivo Electroporation Technique for Knockout Mice Generation

Published on: August 26, 2025

Area of Science:

  • Genomics
  • Bioinformatics
  • Mammalian Genetics

Background:

  • Genomic variations, such as insertions and deletions (indels), are crucial for understanding genetic diversity and evolution in mammals.
  • Comprehensive databases of these variations are essential for genetic research and trait analysis.

Purpose of the Study:

  • To develop and present MouseIndelDB, an integrated database resource for mouse genomic indel polymorphisms.
  • To provide a searchable platform for accessing and analyzing novel indel variations in laboratory mouse strains.

Main Methods:

  • Alignment of 26 million whole-genome shotgun sequence traces from four laboratory mouse strains against the reference C57BL/6J genome using GMAP.
  • Identification and cataloging of indel polymorphisms ranging from 100 nt to 10 Kb.

Main Results:

  • MouseIndelDB contains thousands of previously unreported mouse genomic indel polymorphisms.
  • The database includes variations identified from extensive whole-genome sequencing data.
  • Queryable data by chromosomal coordinates, gene names, mouse strain, and polymorphism class.

Conclusions:

  • MouseIndelDB serves as a valuable resource for researchers in mammalian genetics, genomics, and evolutionary biology.
  • The database facilitates the study of genetic variation and its impact on traits and evolution.
  • Freely accessible online at http://variation.osu.edu/.