DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity

Jeremy D Henson1, Ying Cao, Lily I Huschtscha

  • 1Children's Medical Research Institute, University of Sydney, New South Wales, Australia.

Nature Biotechnology
|November 26, 2009
PubMed

Insights

Alternative lengthening of telomeres (ALT) is a cancer growth mechanism. Researchers developed a C-circle assay to detect ALT activity, aiding in the development of new cancer treatments.

Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • Alternative lengthening of telomeres (ALT) is a telomere maintenance mechanism crucial for the growth of approximately 10% of human cancers.
  • Inhibition of ALT can induce cellular senescence, making it a promising target for anticancer therapies.
  • The absence of a suitable ALT activity assay and specific molecular targets has hindered the development of ALT inhibitors.

Purpose of the Study:

  • To identify ALT-specific molecular markers.
  • To develop a reliable assay for measuring ALT activity.
  • To explore the clinical utility of the assay for cancer diagnosis and management.

Main Methods:

  • Characterization of telomeric DNA circles (C-circles) as specific markers of ALT activity.
  • Development of a rapid and linearly responsive C-circle assay (CC assay) for ALT activity.
  • Detection of C-circles in blood samples from osteosarcoma patients with ALT(+) tumors.

Main Results:

  • Partially single-stranded telomeric DNA circles (C-circles) were identified as specific to the ALT pathway.
  • The developed CC assay demonstrated rapid and linear responsiveness to ALT activity.
  • C-circles were detected in the blood of osteosarcoma patients with ALT(+) tumors, indicating potential clinical relevance.

Conclusions:

  • C-circles are specific biomarkers for the ALT telomere maintenance mechanism.
  • The CC assay provides a valuable tool for screening ALT inhibitors and advancing anticancer drug development.
  • The CC assay shows potential for clinical applications in diagnosing and managing ALT(+) cancers.

Related Concept Videos

Telomeres and Telomerase02:41

Telomeres and Telomerase

In eukaryotic DNA replication, a single-stranded DNA fragment remains at the end of a chromosome after the removal of the final primer. This section of DNA cannot be replicated in the same manner as the rest of the strand because there is no 3’ end to which the newly synthesized DNA can attach. This non-replicated fragment results in gradual loss of the chromosomal DNA during each cell duplication. Additionally, it can induce a DNA damage response by enzymes that recognize single-stranded DNA.
Telomeres and Telomerase02:41

Telomeres and Telomerase

In eukaryotic DNA replication, a single-stranded DNA fragment remains at the end of a chromosome after the removal of the final primer. This section of DNA cannot be replicated in the same manner as the rest of the strand because there is no 3’ end to which the newly synthesized DNA can attach. This non-replicated fragment results in gradual loss of the chromosomal DNA during each cell duplication. Additionally, it can induce a DNA damage response by enzymes that recognize single-stranded DNA.
Replication in Eukaryotes02:31

Replication in Eukaryotes

Overview
Replication in Eukaryotes01:29

Replication in Eukaryotes

In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high fidelity before cell division, so there are many proteins that fulfill specialized roles in the replication process. Replication occurs in three phases: initiation, elongation, and termination, and ends with two complete sets of chromosomes in the nucleus.
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...
Replicative Cell Senescence02:15

Replicative Cell Senescence

Replicative cell senescence is a property of cells that allows them to divide a finite number of times throughout the organism's lifespan while preventing excessive proliferation. Replicative senescence is associated with the gradual loss of the telomere — short, repetitive DNA sequences found at the end of the chromosomes. Telomeres are bound by a group of proteins to form a protective cap on the ends of chromosomes. Embryonic stem cells express telomerase — an enzyme that adds the telomeric...
Chromatin Packaging01:32

Chromatin Packaging

Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...