A simple and reliable method to conduct and monitor expression cassette integration into the Escherichia coli chromosome
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Updated: Jun 18, 2026

Site-specific Bacterial Chromosome Engineering: ΦC31 Integrase Mediated Cassette Exchange (IMCE)
Published on: March 16, 2012
Christoph Albermann1, Natalie Trachtmann, Georg A Sprenger
1Institute of Microbiology, Universität Stuttgart, Stuttgart, Germany. christoph.albermann@imb.uni-stuttgart.de
Abstract:
We report a method for the integration of expression cassettes into the Escherichia coli chromosome using rare and dispensable sugar degradation gene loci as sites for integration. Clones carrying successfully recombined DNA fragments in the chromosome are easily screened using a solid differential medium containing the respective sugar compound. As an example for the heterologous expression of a complex natural product biosynthesis pathway, we show the stepwise chromosomal integration of the zeaxanthin biosynthesis pathway from Pantoea ananatis into E. coli.

