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Published on: July 17, 2021
Identification of two common variants contributing to serum apolipoprotein B levels in Mexicans
Daphna Weissglas-Volkov1, Christopher L Plaisier, Adriana Huertas-Vazquez
1Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, Calif 90095-7088, USA.
Background And Purpose:
Although the Mexican population has a high predisposition to dyslipidemias and premature coronary artery disease, this population is underinvestigated for the genetic factors conferring the high susceptibility. This study attempted to determine these genetic factors.
Methods And Results:
First, we investigated apolipoprotein B (apoB) levels in Mexican extended families with familial combined hyperlipidemia using a two-step testing strategy. In the screening step, we screened 5721 single-nucleotide polymorphisms (SNPs) for linkage signals with apoB. In the test step, we analyzed the 130 SNPs residing in regions of suggestive linkage signals for association with apoB. We identified significant associations with two SNPs (ie, rs1424032 [P=6.07x10(-6)] and rs1349411 [P=2.72x10(-4)]) that surpassed the significance level for the number of tests performed in the test step (P<3.84x10(-4)). Second, these SNPs were tested for replication in Mexican hyperlipidemic case-control samples. The same risk alleles as in the families with familial combined hyperlipidemia were significantly associated (P<0.05) with apoB in the case-control samples. The rs1349411 resides near the apoB messenger RNA editing enzyme (APOBEC1) involved in the processing of APOB messenger RNA in the small intestine. The rs1424032 resides in a highly conserved noncoding region predicted to function as a regulatory element.
Conclusions:
We identified two novel variants, rs1349411 and rs1424032, for serum apoB levels in Mexicans.
Insights
Researchers identified two novel genetic variants, rs1349411 and rs1424032, associated with serum apolipoprotein B (apoB) levels in the Mexican population, contributing to understanding dyslipidemia risk.
Area of Science:
- Genetics
- Cardiovascular Disease Research
- Population Health
Background:
- The Mexican population exhibits a high prevalence of dyslipidemias and premature coronary artery disease.
- Genetic factors contributing to this susceptibility in Mexicans remain under-investigated.
Purpose of the Study:
- To identify genetic factors associated with high serum apolipoprotein B (apoB) levels in the Mexican population.
- To investigate genetic predispositions to dyslipidemias and premature coronary artery disease in Mexicans.
Main Methods:
- A two-step strategy was employed, screening 5721 single-nucleotide polymorphisms (SNPs) for linkage with apoB levels in Mexican families with familial combined hyperlipidemia.
- 130 SNPs in linkage regions were analyzed for association with apoB, followed by replication in Mexican hyperlipidemic case-control samples.
Main Results:
- Two SNPs, rs1424032 (P=6.07x10(-6)) and rs1349411 (P=2.72x10(-4)), showed significant association with apoB levels, surpassing the stringent significance threshold.
- Replication in case-control samples confirmed the association of the same risk alleles with elevated apoB levels.
- rs1349411 is located near APOB messenger RNA editing enzyme (APOBEC1), while rs1424032 is in a conserved regulatory noncoding region.
Conclusions:
- Two novel variants, rs1349411 and rs1424032, were identified as significantly associated with serum apoB levels in the Mexican population.
- These findings contribute to understanding the genetic basis of dyslipidemia and coronary artery disease susceptibility in Mexicans.
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