High-level ciprofloxacin resistance among hospital-adapted Enterococcus faecium (CC17)
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Updated: Jun 17, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Guido Werner1, Carola Fleige, Birgit Ewert
1Robert Koch Institute, Wernigerode Branch, Wernigerode, Germany. wernerg@rki.de
Abstract:
Hospital-adapted Enterococcus faecium differ from their colonising variants in humans and animals by additional genomic content. Molecular typing based on multilocus sequence typing (MLST) allows allocation of isolates to specific clonal complexes (CCs), such as CC17 for hospital-adapted strains. Acquired ampicillin resistance is a specific feature of these hospital isolates, especially in Europe. A few recent reports have described acquired high-level ciprofloxacin resistance as a supposed feature of hospital-adapted E. faecium strains. In the present retrospective analysis, ciprofloxacin minimum inhibitory concentrations (MICs) of 609 clinical isolates from German hospital patients (1997-2007) were determined and a breakpoint for high-level resistance was deduced (>16mg/L). Acquired high-level ciprofloxacin resistance was distributed among isolates of 26 different MLST types (all CC17), indicating a wide prevalence of this acquired resistance trait among the hospital-adapted E. faecium population. High-level ciprofloxacin resistance was linked to gyrA and parC mutations in 98 investigated isolates. Eleven different allele types or combinations thereof were identified. Their allocation to specific MLST and pulsed-field gel electrophoresis (PFGE) types revealed differences in the emergence and spread of corresponding mutations and strains.
Insights
Hospital-adapted Enterococcus faecium strains, particularly CC17, frequently exhibit high-level ciprofloxacin resistance. This acquired resistance is widespread among hospital isolates and linked to specific gyrA and parC mutations.
Area of Science:
- Microbiology
- Genomics
- Infectious Diseases
Background:
- Hospital-adapted Enterococcus faecium possess distinct genomic content compared to colonizing strains.
- Multilocus sequence typing (MLST) identifies hospital-adapted strains within clonal complexes (CCs), notably CC17.
- Acquired ampicillin resistance is common in European hospital E. faecium, with recent reports suggesting high-level ciprofloxacin resistance.
Purpose of the Study:
- To investigate the prevalence and genetic basis of high-level ciprofloxacin resistance in hospital-adapted Enterococcus faecium.
- To determine the association between ciprofloxacin resistance and specific MLST types and mutations.
Main Methods:
- Retrospective analysis of 609 clinical Enterococcus faecium isolates from German hospitals (1997-2007).
- Determination of ciprofloxacin minimum inhibitory concentrations (MICs) and establishment of a high-level resistance breakpoint (>16mg/L).
- Genomic analysis of 98 resistant isolates, including MLST, pulsed-field gel electrophoresis (PFGE), and sequencing of gyrA and parC genes.
Main Results:
- High-level ciprofloxacin resistance was identified in isolates belonging to 26 different MLST types, all within CC17, indicating broad prevalence.
- The resistance was strongly associated with mutations in the gyrA and parC genes, with eleven distinct allele types or combinations identified.
- Analysis of MLST and PFGE types revealed variations in the emergence and dissemination patterns of resistant strains and their associated mutations.
Conclusions:
- High-level ciprofloxacin resistance is a prevalent acquired trait among hospital-adapted Enterococcus faecium (CC17) in German hospitals.
- The resistance is primarily mediated by mutations in gyrA and parC, with diverse genetic backgrounds and spread dynamics observed.
- Understanding the molecular epidemiology of ciprofloxacin resistance is crucial for managing hospital-acquired infections caused by E. faecium.
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