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Updated: Jun 17, 2026

Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing
Published on: August 25, 2018
Prevalence of five pathogenic agents in questing Ixodes ricinus ticks from western France
Violaine Cotté1, Sarah Bonnet, Martine Cote
1UMR 956 INRA/AFSSA/ENVA/UPVM, AFSSA, Maisons-Alfort, France.
Abstract:
In Europe, Ixodes ricinus ticks are vectors of many emerging pathogens, including Borrelia burgdorferi sensu lato (sl), Anaplasma phagocytophilum, spotted fever group Rickettsia sp., Babesia sp., and very likely Bartonella sp. In this study, we looked for the presence of DNA of these microorganisms in 572 ticks from two forests in the west of France. DNA extraction and polymerase chain reaction (PCR) amplification were performed on individual nymphal, male, and female I. ricinus ticks. Amplification from 1 tick among the 572 samples (0.2%) resulted in PCR products with Bartonella-specific primers. Sequence analysis of the amplified fragment did not lead to species identification. Two ticks (0.3%) carried A. phagocytophilum-specific DNA. Eight ticks (1.4%) were positive with spotted fever group Rickettsia-specific primers, and all PCR fragments were related to Rickettsia helvetica. Thirty-five ticks (6.1%) were positive with B. burgdorferi sl-specific primers; the sequences were all related to Borrelia garinii or Borrelia afzelii, except one that was related to Borrelia carolinensis, a newly described species never reported in Europe so far. Thirty-five ticks (6.1%) carried Babesia sp. DNA. Female adults were more infected by B. burgdorferi sl than male adults. The prevalence of B. burgdorferi sl and Babesia sp. was significantly different between the two forests, with a higher prevalence of B. burgdorferi sl in ticks from the forest of Princé and a higher prevalence of Babesia sp. in ticks from the forest of Gâvre. To our knowledge, this is the first study that has detected all five pathogens in questing I. ricinus in the west of France and the first report of B. carolinensis DNA in ticks in Europe.
Insights
This study detected five tick-borne pathogens in Ixodes ricinus ticks in western France, including Borrelia burgdorferi sensu lato and a novel Borrelia carolinensis strain.
Area of Science:
- Veterinary Entomology
- Molecular Biology
- Infectious Diseases
Background:
- Ixodes ricinus ticks in Europe transmit numerous emerging pathogens.
- Understanding pathogen prevalence in ticks is crucial for public health and veterinary medicine.
Purpose of the Study:
- To investigate the presence of DNA from five key microorganisms in Ixodes ricinus ticks from two forests in western France.
- To identify specific tick-borne pathogens and their prevalence in the studied tick population.
Main Methods:
- DNA extraction and polymerase chain reaction (PCR) amplification were performed on individual ticks.
- Specific primers were used to detect Borrelia burgdorferi sensu lato, Anaplasma phagocytophilum, Rickettsia sp., Babesia sp., and Bartonella sp.
- Sequence analysis was employed for pathogen identification.
Main Results:
- Borrelia burgdorferi sensu lato (6.1%) and Babesia sp. (6.1%) were the most prevalent pathogens.
- Rickettsia helvetica was identified in 8 ticks (1.4%).
- Anaplasma phagocytophilum (0.3%) and Bartonella sp. (0.2%) were detected at lower rates. Notably, Borrelia carolinensis DNA was found in a European tick for the first time.
Conclusions:
- This study provides the first comprehensive detection of these five pathogens in questing Ixodes ricinus ticks in western France.
- Significant variations in pathogen prevalence were observed between the two study sites.
- The identification of Borrelia carolinensis in Europe highlights the dynamic nature of tick-borne diseases and the need for ongoing surveillance.
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