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Updated: Jun 17, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Impaired methylation as a novel mechanism for proteasome suppression in liver cells
Natalia A Osna1, Ronda L White, Terrence M Donohue
1Liver Study Unit, The Omaha Veterans Affairs (VA) Medical Center, Omaha, NE 68105, USA. nosna@UNMC.edu
Abstract:
The proteasome is a multi-catalytic protein degradation enzyme that is regulated by ethanol-induced oxidative stress; such suppression is attributed to CYP2E1-generated metabolites. However, under certain conditions, it appears that in addition to oxidative stress, other mechanisms are also involved in proteasome regulation. This study investigated whether impaired protein methylation that occurs during exposure of liver cells to ethanol, may contribute to suppression of proteasome activity. We measured the chymotrypsin-like proteasome activity in Huh7CYP cells, hepatocytes, liver cytosols and nuclear extracts or purified 20S proteasome under conditions that maintain or prevent protein methylation. Reduction of proteasome activity of hepatoma cell and hepatocytes by ethanol or tubercidin was prevented by simultaneous treatment with S-adenosylmethionine (SAM). Moreover, the tubercidin-induced decline in proteasome activity occurred in both nuclear and cytosolic fractions. In vitro exposure of cell cytosolic fractions or highly purified 20S proteasome to low SAM:S-adenosylhomocysteine (SAH) ratios in the buffer also suppressed proteasome function, indicating that one or more methyltransferase(s) may be associated with proteasomal subunits. Immunoblotting a purified 20S rabbit red cell proteasome preparation using methyl lysine-specific antibodies revealed a 25kDa proteasome subunit that showed positive reactivity with anti-methyl lysine. This reactivity was modified when 20S proteasome was exposed to differential SAM:SAH ratios. We conclude that impaired methylation of proteasome subunits suppressed proteasome activity in liver cells indicating an additional, yet novel mechanism of proteasome activity regulation by ethanol.
Insights
Ethanol exposure impairs liver cell proteasome activity through reduced protein methylation, not just oxidative stress. This novel mechanism highlights methylation
Area of Science:
- Biochemistry
- Cell Biology
- Molecular Biology
Background:
- The proteasome, a protein degradation enzyme, is regulated by ethanol-induced oxidative stress via CYP2E1 metabolites.
- Emerging evidence suggests additional mechanisms beyond oxidative stress influence proteasome regulation.
Purpose of the Study:
- To investigate if impaired protein methylation during ethanol exposure contributes to proteasome activity suppression in liver cells.
- To elucidate the role of protein methylation in ethanol-induced proteasome dysfunction.
Main Methods:
- Measured chymotrypsin-like proteasome activity in liver cells, cytosols, nuclear extracts, and purified 20S proteasome.
- Assessed the impact of ethanol, tubercidin, and S-adenosylmethionine (SAM) on proteasome activity.
- Utilized methyl lysine-specific antibodies to detect methylation on proteasome subunits.
Main Results:
- Ethanol and tubercidin reduced proteasome activity, an effect reversed by S-adenosylmethionine (SAM).
- Proteasome activity decline occurred in both nuclear and cytosolic fractions.
- Low SAM:S-adenosylhomocysteine (SAH) ratios suppressed proteasome function in vitro, and a 25kDa subunit showed methyl lysine reactivity.
Conclusions:
- Impaired methylation of proteasome subunits suppresses proteasome activity in liver cells.
- This represents a novel mechanism of proteasome regulation by ethanol, independent of oxidative stress.
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