Related Experiment Video
Updated: Jun 4, 2026

Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
Published on: July 14, 2015
Projective nonnegative graph embedding
Xiaobai Liu1, Shuicheng Yan, Hai Jin
1Huazhong University of Science and Technology, China. elelxb@nus.edu.sg
Abstract:
We present in this paper a general formulation for nonnegative data factorization, called projective nonnegative graph embedding (PNGE), which 1) explicitly decomposes the data into two nonnegative components favoring the characteristics encoded by the so-called intrinsic and penalty graphs , respectively, and 2) explicitly describes how to transform each new testing sample into its low-dimensional nonnegative representation. In the past, such a nonnegative decomposition was often obtained for the training samples only, e.g., nonnegative matrix factorization (NMF) and its variants, nonnegative graph embedding (NGE) and its refined version multiplicative nonnegative graph embedding (MNGE). Those conventional approaches for out-of-sample extension either suffer from the high computational cost or violate the basic nonnegative assumption. In this work, PNGE offers a unified solution to out-of-sample extension problem, and the nonnegative coefficient vector of each datum is assumed to be projected from its original feature representation with a universal nonnegative transformation matrix. A convergency provable multiplicative nonnegative updating rule is then derived to learn the basis matrix and transformation matrix. Extensive experiments compared with the state-of-the-art algorithms on nonnegative data factorization demonstrate the algorithmic properties in convergency, sparsity, and classification power.
Related Concept Videos
Ogive Graph
Vector Algebra: Graphical Method
We use the laws of geometry to construct resultant vectors, followed by trigonometry to find vector magnitudes and directions. For a geometric construction of the sum of two vectors in a plane, we follow the parallelogram rule. Suppose two vectors are at arbitrary positions. Translate either one of...
Graphs of Equations in Two Variables
Graphs of Functions
Graphical Representation of Inequalities
Graphs of Polar Equations

