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Updated: Jun 17, 2026

Microbiological Rapid On-Site Evaluation for Pulmonary Infectious Diseases
Published on: March 1, 2024
[Positive Pneumocystis jirovecii PCR in immunocompromised patients with a systemic disease: infection or
A Mekinian1, V Queyrel, I Durand-Joly
1hôpital Claude-Huriez, CHRU de Lille, France. arsene150@yahoo.fr
Purpose:
Pneumocystis pneumonia is a serious opportunistic infection that frequently occurred in HIV-seropositive patients, prior to the advent of highly active antiretroviral therapy. This infection can also occur in patients with systemic diseases. The diagnostic value of a positive Pneumocystis jirovecii PCR in patients with systemic diseases has not yet been clearly defined.
Methods:
We conducted a retrospective study of patients with a systemic disease who presented clinical symptoms consistent with Pneumocystis pneumonia to assess the diagnostic value of a positive P. jirovecii PCR in respiratory samples.
Results:
During a 10-year period, 73 patients with respiratory symptoms underwent respiratory sampling with tests for the presence of P. jirovecii. P. jirovecii PCR was positive in 20 patients: Pneumocystis pneumonia was diagnosed in nine patients and for six of these nine patients, the microscopic examination was negative. Patients with Pneumocystis pneumonia differed from those who were solely colonized in that they had a lower CD4+ T lymphocyte count, were more likely to have received immunosuppressive treatment, and were not receiving primary prophylaxis against Pneumocystis pneumonia. Chronic pulmonary involvement was more frequent among colonized patients.
Conclusion:
A positive P. jirovecii PCR does not always indicate overt infection. However, in a context of severe immunosuppression and in the absence of prophylaxis against Pneumocystis pneumonia, a specific treatment should be considered.
Insights
A positive Pneumocystis jirovecii PCR test in patients with systemic diseases doesn't always confirm Pneumocystis pneumonia. However, severe immunosuppression warrants considering treatment even with a positive PCR.
Area of Science:
- Medical Microbiology
- Infectious Diseases
- Pulmonology
Background:
- Pneumocystis pneumonia (PCP) is a severe opportunistic infection.
- PCP commonly affects HIV-seropositive individuals and those with systemic diseases.
- The diagnostic utility of Pneumocystis jirovecii PCR in systemic disease patients is unclear.
Purpose of the Study:
- To evaluate the diagnostic value of a positive Pneumocystis jirovecii PCR in respiratory samples.
- To assess Pneumocystis pneumonia diagnosis in patients with systemic diseases.
Main Methods:
- Retrospective study of 73 patients with systemic disease and respiratory symptoms.
- Respiratory sampling and Pneumocystis jirovecii PCR testing over a 10-year period.
- Comparison of patients diagnosed with PCP versus those colonized.
Main Results:
- P. jirovecii PCR was positive in 20 patients; PCP was diagnosed in nine.
- Microscopic examination was negative in six of the nine PCP patients.
- PCP patients had lower CD4+ counts, more immunosuppressive treatment, and lacked prophylaxis compared to colonized patients.
Conclusions:
- A positive P. jirovecii PCR does not definitively indicate Pneumocystis pneumonia.
- Treatment for PCP should be considered in severely immunosuppressed patients without prophylaxis, despite a positive PCR.
- Distinguishing infection from colonization is crucial for appropriate management.
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