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Descriptive distribution and phylogenetic analysis of feline infectious peritonitis virus isolates of Malaysia
Saeed Sharif1, Siti S Arshad, Mohd Hair-Bejo
1Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia.
Abstract:
The descriptive distribution and phylogeny of feline coronaviruses (FCoVs) were studied in cats suspected of having feline infectious peritonitis (FIP) in Malaysia. Ascitic fluids and/or biopsy samples were subjected to a reverse transcription polymerase chain reaction (RT-PCR) targeted for a conserved region of 3'untranslated region (3'UTR) of the FCoV genome. Eighty nine percent of the sampled animals were positive for the presence of FCoV. Among the FCoV positive cats, 80% of cats were males and 64% were below 2 years of age. The FCoV positive cases included 56% domestic short hair (DSH), 40% Persian, and 4% Siamese cats. The nucleotide sequences of 10 selected amplified products from FIP cases were determined. The sequence comparison revealed that the field isolates had 96% homology with a few point mutations. The extent of homology decreased to 93% when compared with reference strains. The overall branching pattern of phylogenetic tree showed two distinct clusters, where all Malaysian isolates fall into one main genetic cluster. These findings provided the first genetic information of FCoV in Malaysia.
Insights
Feline coronaviruses (FCoVs) were detected in 89% of cats with feline infectious peritonitis (FIP) in Malaysia. Genetic analysis revealed Malaysian FCoV isolates form a distinct cluster, providing crucial insights into feline coronavirus in the region.
Area of Science:
- Veterinary Virology
- Molecular Epidemiology
- Feline Infectious Diseases
Background:
- Feline infectious peritonitis (FIP) is a severe disease in cats caused by feline coronaviruses (FCoVs).
- Limited genetic data on FCoVs exists for Malaysia, hindering epidemiological understanding.
Purpose of the Study:
- To investigate the distribution and genetic characteristics of FCoVs in cats with suspected FIP in Malaysia.
- To provide the first genetic information on FCoV isolates from Malaysia.
Main Methods:
- Reverse transcription polymerase chain reaction (RT-PCR) was used to detect FCoV in ascitic fluid and biopsy samples.
- Nucleotide sequencing of the 3' untranslated region (3'UTR) of the FCoV genome was performed on positive samples.
- Phylogenetic analysis was conducted to determine the genetic relationships of Malaysian FCoV isolates.
Main Results:
- FCoV was detected in 89% of the sampled cats.
- The majority of FCoV-positive cats were male (80%) and under 2 years old (64%).
- Sequencing revealed Malaysian FCoV isolates share 96% homology with each other and 93% with reference strains, forming a distinct genetic cluster.
Conclusions:
- Feline coronaviruses are highly prevalent in cats with FIP in Malaysia.
- Malaysian FCoV isolates represent a genetically distinct group, contributing novel data to global FCoV phylogeny.
- This study establishes a genetic baseline for FCoV in Malaysia, crucial for future disease control efforts.
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