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Updated: Jun 17, 2026

Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
The alternatively spliced murine pregnane X receptor isoform, mPXR(delta171-211) exhibits a repressive action
Marko Matic1, Anthony P Corradin, Maria Tsoli
1Cancer Pharmacology Unit, ANZAC Research Institute, Hospital Road, Concord RG Hospital, NSW 2139, Australia. mmatic@med.usyd.edu.au
Abstract:
The orphan nuclear receptor pregnane X receptor regulates enzymes and transport proteins involved in the detoxification and clearance of numerous endobiotic and xenobiotic compounds, including pharmaceutical agents. Multiple alternatively spliced pregnane X receptor isoforms have been identified which are significantly expressed in humans and mice (up to 30% of the total pregnane X receptor transcript), however, little is known about their biological action. We explored functional differences between the major mouse pregnane X receptor isoforms mPXR(431) and mPXR(Delta171-211) that lacks 41 amino acids adjacent to the ligand-binding pocket. Transient transfection assays showed that mPXR(Delta171-211) reduced the basal transcription of cytochrome P450 3A4 and the drug transporter P-glycoprotein/Multi Drug Resistance Protein 1 and directly repressed the regulatory effects of mPXR(431) on these genes. Replacement of the mPXR(Delta171-211) DNA-binding domain with that of GAL4 showed mPXR(Delta171-211) retained its repressive role independent of binding to PXR responsive elements located within the cytochrome P450 3A4 and Multi Drug Resistance Protein 1 regulatory regions. Use of the histone deacetylase inhibitor, trichostatin A, demonstrated that the repressive function of mPXR(Delta171-211) acts independently of histone acetylation state. Protein interaction assays revealed mPXR(Delta171-211) and mPXR(431) differentially bind the obligatory heterodimer partner retinoid X receptor. Furthermore, mPXR(431) and mPXR(Delta171-211) proteins could heterodimerize. These studies demonstrate that the variant mouse PXR isoform, mPXR(Delta171-211), has a distinct repressive function from mPXR(431) in regulating genes encoding important drug metabolizing enzymes and transport proteins.
Insights
A variant mouse pregnane X receptor (PXR) isoform, mPXR(Δ171-211), represses drug-metabolizing enzymes and transporters. This isoform functions differently from the major mPXR(431), impacting drug clearance pathways.
Area of Science:
- Pharmacology
- Molecular Biology
- Biochemistry
Background:
- The pregnane X receptor (PXR) is a nuclear receptor regulating xenobiotic and endobiotic metabolism.
- Multiple PXR isoforms exist, but their functions are largely unknown.
- Understanding PXR isoform function is crucial for drug metabolism and toxicity.
Purpose of the Study:
- To investigate functional differences between major mouse PXR isoforms: mPXR(431) and mPXR(Δ171-211).
- To elucidate the mechanism underlying the repressive function of mPXR(Δ171-211).
Main Methods:
- Transient transfection assays to assess gene transcription.
- DNA-binding domain swap experiments.
- Histone deacetylase inhibitor treatment.
- Protein-protein interaction assays.
Main Results:
- mPXR(Δ171-211) reduced basal transcription of CYP3A4 and P-glycoprotein.
- mPXR(Δ171-211) repressed mPXR(431) activity independently of PXR response elements.
- Repressive function of mPXR(Δ171-211) is independent of histone acetylation.
- Differential binding to retinoid X receptor and heterodimerization observed between isoforms.
Conclusions:
- The mPXR(Δ171-211) isoform exhibits a distinct repressive function compared to mPXR(431).
- This variant PXR isoform influences the regulation of key drug-metabolizing enzymes and transporters.
- Findings highlight the importance of PXR isoform diversity in drug response.
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