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Nanomechanics of Drug-target Interactions and Antibacterial Resistance Detection
Published on: October 25, 2013
Genetically engineered lipopeptide antibiotics related to A54145 and daptomycin with improved properties
Kien T Nguyen1, Xiaowei He, Dylan C Alexander
1Cubist Pharmaceuticals, Inc., Lexington, Massachusetts 02421, USA.
Abstract:
Daptomycin is a cyclic lipopeptide antibiotic approved for the treatment of skin and skin structure infections caused by Gram-positive pathogens and for that of bacteremia and right-sided endocarditis caused by Staphylococcus aureus. Daptomycin failed to meet noninferiority criteria for the treatment of community-acquired pneumonia, likely due to sequestration in pulmonary surfactant. Many analogues of daptomycin have been generated by combinatorial biosynthesis, but only two displayed improved activity in the presence of bovine surfactant, and neither was as active as daptomycin in vitro. In the present study, we generated hybrid molecules of the structurally related lipopeptide A54145 in Streptomyces fradiae and tested them for antibacterial activity in the presence of bovine surfactant. Hybrid A54145 nonribosomal peptide synthetase (NRPS) biosynthetic genes were constructed by genetic engineering and were expressed in combination with a deletion of the lptI methyltransferase gene, which is involved in the formation of the 3-methyl-glutamic acid (3mGlu) residue at position 12. Some of the compounds were very active against S. aureus and other Gram-positive pathogens; one compound was also highly active in the presence of bovine surfactant, had low acute toxicity, and showed some efficacy against Streptococcus pneumoniae in a mouse model of pulmonary infection.
Insights
Researchers engineered hybrid lipopeptides based on A54145 to combat Gram-positive bacterial infections. One novel compound demonstrated high activity against Staphylococcus aureus and efficacy in a pneumonia model, even with pulmonary surfactant present.
Area of Science:
- Microbiology
- Medicinal Chemistry
- Drug Discovery
Background:
- Daptomycin is an antibiotic for Gram-positive infections but ineffective for pneumonia due to surfactant interaction.
- Existing daptomycin analogues show limited improvement in activity against surfactant-affected pathogens.
Purpose of the Study:
- To develop novel lipopeptide analogues with improved activity in the presence of pulmonary surfactant.
- To investigate the antibacterial efficacy of hybrid A54145 molecules against Gram-positive pathogens, including Staphylococcus aureus.
Main Methods:
- Genetic engineering of hybrid A54145 nonribosomal peptide synthetase (NRPS) biosynthetic genes.
- Expression of engineered genes in Streptomyces fradiae with deletion of the lptI methyltransferase gene.
- Testing antibacterial activity of generated compounds in the presence of bovine surfactant and in a mouse model of pulmonary infection.
Main Results:
- Several hybrid A54145 compounds exhibited potent activity against Staphylococcus aureus and other Gram-positive pathogens.
- One hybrid molecule showed significant activity in the presence of bovine surfactant and low acute toxicity.
- This compound demonstrated efficacy against Streptococcus pneumoniae in a mouse model of pulmonary infection.
Conclusions:
- Hybrid lipopeptide engineering is a viable strategy to overcome surfactant-related drug inactivation.
- The novel A54145 analogue shows promise as a therapeutic agent for Gram-positive bacterial infections, including pneumonia.
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