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Updated: Jun 16, 2026

Analysis of RNA Processing Reactions Using Cell Free Systems: 3' End Cleavage of Pre-mRNA Substrates in vitro
Published on: May 3, 2014
Enzymatic processing of platinated RNAs
Erich G Chapman1, Victoria J DeRose
1Department of Chemistry, University of Oregon, Eugene, Oregon 97403, USA.
Abstract:
The broadly prescribed antitumor drug cisplatin coordinates to DNA, altering the activity of cellular proteins whose functions rely upon sensing DNA structure. Cisplatin is also known to coordinate to RNA, but the effects of RNA-Pt adducts on the large number of proteins that process the transcriptome are currently unknown. In an effort to address how platination of an RNA alters the function of RNA processing enzymes, we have determined the influence of [Pt(NH(3))(2)](2+)-RNA adducts on the activities of 3'-->5' and 5'-->3' phosphodiesterases, a purine-specific endoribonuclease, and a reverse transcriptase. Single Pt(II) adducts on RNA oligonucleotides of the form (5'-U(6)-XY-U(5)-3': XY = GG, GA, AG, GU) are found to block exonucleolytic digestion. Similar disruption of endonucleolytic cleavage is observed, except for the platinated XY = GA RNA where RNase U2 uniquely tolerates platinum modification. Platinum adducts formed with a more complex RNA prevent reverse transcription, providing evidence that platination is capable of interfering with RNA's role in relaying sequence information. The observed disruptions in enzymatic activity point to the possibility that cellular RNA processing may be similarly affected, which could contribute to the cell-wide effects of platinum antitumor drugs. Additionally, we show that thiourea reverses cisplatin-RNA adducts, providing a chemical tool for use in future studies regarding cisplatin targeting of cellular RNAs.
Insights
The antitumor drug cisplatin forms platinum-RNA adducts, disrupting RNA processing enzymes like phosphodiesterases and reverse transcriptase. Thiourea can reverse these platinum-RNA adducts, offering a tool for future research.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Cisplatin is a widely used antitumor drug that primarily targets DNA.
- The interaction of cisplatin with RNA and its impact on RNA processing enzymes are not well understood.
- Understanding RNA-Pt adducts is crucial for comprehending the broader cellular effects of platinum-based chemotherapy.
Purpose of the Study:
- To investigate how platinum-II (Pt(II)) adducts on RNA affect the activity of key RNA processing enzymes.
- To determine the influence of [Pt(NH(3))(2)](2+)-RNA adducts on phosphodiesterases, endoribonucleases, and reverse transcriptase.
- To explore the potential contribution of RNA platination to the cellular effects of cisplatin.
Main Methods:
- Synthesis of RNA oligonucleotides with specific platinum adducts.
- Assays to measure the activity of 3'-->5' and 5'-->3' phosphodiesterases.
- Enzymatic assays using a purine-specific endoribonuclease (RNase U2) and a reverse transcriptase.
- Chemical reversal of platinum-RNA adducts using thiourea.
Main Results:
- Single Pt(II) adducts on RNA oligonucleotides blocked exonucleolytic digestion.
- Most endoribonucleolytic cleavages were disrupted by platinum adducts, with RNase U2 showing tolerance to platination at the GA site.
- Platinum adducts on more complex RNA structures inhibited reverse transcription, indicating interference with RNA sequence information transfer.
- Thiourea was demonstrated to effectively reverse cisplatin-RNA adducts.
Conclusions:
- Cisplatin-RNA adducts significantly impair the function of essential RNA processing enzymes.
- Platinum-induced disruption of RNA processing may contribute to the overall cytotoxicity of cisplatin.
- The findings highlight RNA as a potential target for cisplatin and suggest RNA processing alterations as a mechanism of action.
- Thiourea provides a valuable chemical tool for further investigation of cisplatin-RNA interactions.
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