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Updated: Jun 16, 2026

Pull-down of Calmodulin-binding Proteins
Published on: January 23, 2012
Molecular basis of the death-associated protein kinase-calcium/calmodulin regulator complex
Iñaki de Diego1, Jochen Kuper, Neda Bakalova
1European Molecular Biology Laboratory-Hamburg, Notkestrasse 85, D-22603 Hamburg, Germany.
Abstract:
Death-associated protein kinase (DAPK) provides a model for calcium-bound calmodulin (CaM)-dependent protein kinases (CaMKs). Here, we report the crystal structure of the binary DAPK-CaM complex, using a construct that includes the DAPK catalytic domain and adjacent autoregulatory domain. When DAPK was in a complex with CaM, the DAPK autoregulatory domain formed a long seven-turn helix. This DAPK-CaM module interacted with the DAPK catalytic domain through two separate domain-domain interfaces, which involved the upper and the lower lobe of the catalytic domain. When bound to DAPK, CaM adopted an extended conformation, which was different from that in CaM-CaMK peptide complexes. Complementary biochemical analysis showed that the ability of DAPK to bind CaM correlated with its catalytic activity. Because many features of CaM binding are conserved in other CaMKs, our findings likely provide a generally applicable model for regulation of CaMK activity.
Insights
Death-associated protein kinase (DAPK) complexed with calmodulin (CaM) reveals a novel structure. This DAPK-CaM structure provides insights into calcium-bound calmodulin-dependent protein kinase (CaMK) regulation.
Area of Science:
- Biochemistry
- Structural Biology
- Molecular Biology
Background:
- Death-associated protein kinase (DAPK) is a key enzyme in cellular processes.
- DAPK belongs to the family of calcium-bound calmodulin-dependent protein kinases (CaMKs).
- Understanding CaMK regulation is crucial for deciphering cellular signaling pathways.
Purpose of the Study:
- To elucidate the structural basis of DAPK regulation by calmodulin (CaM).
- To provide a structural model for the broader family of CaMKs.
- To investigate the relationship between CaM binding and DAPK catalytic activity.
Main Methods:
- X-ray crystallography was used to determine the structure of the DAPK-CaM binary complex.
- A construct including the DAPK catalytic and autoregulatory domains was utilized.
- Biochemical assays were performed to assess CaM binding and catalytic activity.
Main Results:
- The crystal structure of the DAPK-CaM complex revealed a unique conformation of both proteins.
- The DAPK autoregulatory domain formed a helical structure upon CaM binding.
- CaM adopted an extended conformation when bound to DAPK, distinct from other CaMK complexes.
- CaM binding positively correlated with DAPK catalytic activity.
Conclusions:
- The DAPK-CaM structure offers a detailed molecular model for CaMK regulation.
- The findings suggest a conserved mechanism for CaM binding across the CaMK family.
- This study provides a foundation for understanding how CaM modulates kinase activity.
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