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Published on: October 17, 2019
[Cloning and identification of the plasmid replication gene repC in Mesorhizobium huakuii]
Guoyuan Hu1, Shanming Wang, Weiwei Li
1Key Laboratory for Green Chemical Process of Ministry of Education, Wuhan Institute of Technology, Wuhan 430073, China. hgy701@tom.com
Objective:
The repC gene is the principal initiation protein gene for plasmid replication. We identified the repC-like sequences from Mesorhizobium huakuii strain HN3015 and its derivatives of plasmid curing.
Methods:
Primers of RC1 and RC3 were used to amplify the repC-like sequences by a polymerase chain reaction, the PCR products were obtained and cloned into plasmid vector pMD-18T and then sequenced. Location of the repC sequences on different plasmids in the strains tested was carried out by Southern blotting. The nucleotides homology analysis of the repC gene was carried out using the BLAST. Amino acid sequences were deduced using the ExPASy. Multiple sequences alignments were performed using the ClustalW. Analysis of protein secondary structure was carried out using the PredictProtein.
Results:
The repC-like sequences were obtained from the strains tested. The sizes of the PCR products were about 750 bp. The results of Southern blotting showed that the repC-like sequences were only associated with a plasmid in the stains tested.
Conclusions:
The repC sequences of the strains tested showed 100% sequence similarity, but were obviously different from that of other rhizobia strains.
Insights
Researchers identified repC-like sequences in Mesorhizobium huakuii, crucial for plasmid replication. These sequences showed high similarity within the strain but differed from other rhizobia, aiding in plasmid research.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Context:
- The repC gene is essential for initiating plasmid replication in bacteria.
- Mesorhizobium huakuii strain HN3015 and its plasmid-cured derivatives were used for this study.
Purpose:
- To identify and characterize repC-like sequences in Mesorhizobium huakuii strain HN3015.
- To determine the location and sequence homology of these repC-like sequences.
Summary:
- RepC-like sequences were successfully amplified and sequenced from Mesorhizobium huakuii using polymerase chain reaction (PCR) with RC1 and RC3 primers.
- Southern blotting confirmed that these sequences are plasmid-associated. The amplified products were approximately 750 bp.
- Sequence analysis revealed 100% similarity among the repC sequences within the tested strains, yet significant differences compared to repC genes from other rhizobia.
Impact:
- This study provides a detailed characterization of the repC gene in Mesorhizobium huakuii.
- The findings contribute to understanding plasmid replication mechanisms in rhizobia.
- The identified sequences can serve as markers for plasmid research in related bacterial species.
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