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Updated: Jun 16, 2026

Determining 3'-Termini and Sequences of Nascent Single-Stranded Viral DNA Molecules during HIV-1 Reverse Transcription in Infected Cells
Published on: January 30, 2019
Biophysical and enzymatic properties of the simian and prototype foamy virus reverse transcriptases
Maximilian J Hartl1, Florian Mayr, Axel Rethwilm
1Universität Bayreuth, Lehrstuhl für Struktur und Chemie der Biopolymere & Research, Center for Biomacromolecules, 95440 Bayreuth, Germany.
Background:
The foamy virus Pol protein is translated independently from Gag using a separate mRNA. Thus, in contrast to orthoretroviruses no Gag-Pol precursor protein is synthesized. Only the integrase domain is cleaved off from Pol resulting in a mature reverse transcriptase harboring the protease domain at the N-terminus (PR-RT). Although the homology between the PR-RTs from simian foamy virus from macaques (SFVmac) and the prototype foamy virus (PFV), probably originating from chimpanzee, exceeds 90%, several differences in the biophysical and biochemical properties of the two enzymes have been reported (i.e. SFVmac develops resistance to the nucleoside inhibitor azidothymidine (AZT) whereas PFV remains AZT sensitive even if the resistance mutations from SFVmac PR-RT are introduced into the PFV PR-RT gene). Moreover, contradictory data on the monomer/dimer status of the foamy virus protease have been published.
Results:
We set out to purify and directly compare the monomer/dimer status and the enzymatic behavior of the two wild type PR-RT enzymes from SFVmac and PFV in order to get a better understanding of the protein and enzyme functions. We determined kinetic parameters for the two enzymes, and we show that PFV PR-RT is also a monomeric protein.
Conclusions:
Our data show that the PR-RTs from SFV and PFV are monomeric proteins with similar biochemical and biophysical properties that are in some aspects comparable with MLV RT, but differ from those of HIV-1 RT. These differences might be due to the different conditions the viruses are confronted with in dividing and non-dividing cells.
Insights
Foamy virus protease-reverse transcriptase (PR-RT) enzymes from SFVmac and PFV are monomeric proteins with similar biochemical properties. These findings clarify enzyme function and may explain differences in viral behavior in host cells.
Area of Science:
- Virology
- Enzymology
- Molecular Biology
Background:
- Foamy viruses synthesize Pol protein independently, unlike orthoretroviruses which produce a Gag-Pol precursor.
- The mature foamy virus enzyme is a protease-reverse transcriptase (PR-RT), with the protease domain at the N-terminus.
- Despite high homology, SFVmac and PFV PR-RTs exhibit distinct properties, including differential sensitivity to azidothymidine (AZT).
Purpose of the Study:
- To directly compare the monomer/dimer status and enzymatic behavior of wild-type SFVmac and PFV PR-RT enzymes.
- To elucidate the functional differences between these two closely related foamy virus enzymes.
Main Methods:
- Purification of wild-type SFVmac and PFV PR-RT enzymes.
- Determination of kinetic parameters for both enzymes.
- Assessment of the monomer/dimer status of PFV PR-RT.
Main Results:
- Both SFVmac and PFV PR-RT enzymes were purified and characterized.
- Kinetic parameters for both enzymes were determined.
- PFV PR-RT was confirmed to be a monomeric protein, similar to SFVmac PR-RT.
Conclusions:
- SFV and PFV PR-RTs are monomeric proteins with comparable biochemical and biophysical properties.
- These properties align with Murine Leukemia Virus (MLV) RT but differ from Human Immunodeficiency Virus type 1 (HIV-1) RT.
- Observed differences may relate to the distinct cellular environments (dividing vs. non-dividing cells) encountered by these viruses.
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