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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
Structures of human MST3 kinase in complex with adenine, ADP and Mn2+
Tzu-Ping Ko1, Wen-Yih Jeng, Chia-I Liu
1Institute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Abstract:
The MST family is a subclass of mammalian serine/threonine kinases that are related to the yeast sterile-20 protein and are implicated in regulating cell growth and transformation. The MST3 protein contains a 300-residue catalytic domain and a 130-residue regulatory domain, which can be cleaved by caspase and activated by autophosphorylation, promoting apoptosis. Here, five crystal structures of the catalytic domain of MST3 are presented, including a complex with ADP and manganese, a unique cofactor preferred by the enzyme, and a complex with adenine. Similar to other protein kinases, the catalytic domain of MST3 folds into two lobes: the smaller N lobe forms the nucleotide-binding site and the larger C lobe recognizes the polypeptide substrate. The bound ADP and Mn(2+) ions are covered by a glycine-rich loop and held in place by Asn149 and Asp162. A different orientation was observed for the ligand in the MST3-adenine complex. In the activation loop, the side chain of Thr178 is phosphorylated and is sandwiched by Arg143 and Arg176. Comparison of this structure with other similar kinase structures shows a 180 degrees rotation of the loop, leading to activation of the enzyme. The well defined protein-ligand interactions also provide useful information for the design of potent inhibitors.
Insights
Mammalian sterile 20-related kinase 3 (MST3) structures reveal its catalytic domain, preferred manganese cofactor, and activation mechanism. These findings aid in designing potent MST3 inhibitors for cell growth and apoptosis regulation.
Area of Science:
- Biochemistry
- Structural Biology
- Molecular Biology
Background:
- The MST (mammalian sterile 20-related kinase) family are serine/threonine kinases involved in cell growth and transformation.
- MST3 protein has a catalytic domain and a regulatory domain, crucial for apoptosis.
- Caspase cleavage and autophosphorylation activate MST3.
Purpose of the Study:
- To present crystal structures of the MST3 catalytic domain.
- To elucidate the enzyme's interaction with its preferred cofactor, manganese, and ADP.
- To understand the structural basis of MST3 activation.
Main Methods:
- X-ray crystallography was used to determine five crystal structures of the MST3 catalytic domain.
- Structures include complexes with ADP and manganese, and with adenine.
- Comparative structural analysis with related kinases was performed.
Main Results:
- The MST3 catalytic domain adopts a two-lobe structure typical of protein kinases.
- Specific interactions of ADP and Mn(2+) within the nucleotide-binding site were detailed.
- Phosphorylation of Thr178 in the activation loop, stabilized by Arg143 and Arg176, was observed, indicating an active conformation.
Conclusions:
- The determined structures provide detailed insights into MST3's catalytic mechanism and cofactor preference.
- The unique orientation of the activation loop suggests a conserved activation mechanism across kinases.
- These findings offer a structural basis for the rational design of MST3 inhibitors.
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