Related Experiment Video
Updated: Jun 16, 2026

09:32
Resolving Water, Proteins, and Lipids from In Vivo Confocal Raman Spectra of Stratum Corneum through a Chemometric Approach
Published on: September 26, 2019
Removing cosmic ray features from Raman map data by a refined nearest neighbor comparison method as a precursor for
Ute B Cappel1, Ian M Bell, Laura K Pickard
1School of Chemistry, University of Bristol, Bristol BS8 1TS, UK.
Applied Spectroscopy
|February 13, 2010
Summary
This study introduces a new algorithm to remove cosmic ray (CR) artifacts from Raman spectra. The method effectively cleans spectral data, ensuring accurate analysis in mapping experiments.
Area of Science:
- Spectroscopy
- Data Analysis
- Materials Science
Background:
- Raman spectroscopy mapping generates large datasets.
- Cosmic ray (CR) artifacts can contaminate spectral data, hindering analysis.
- Existing methods may struggle with varying signal-to-noise ratios.
Purpose of the Study:
- To develop and present a robust algorithm for removing CR features from CCD-based Raman spectra.
- To ensure the accurate recovery of underlying spectral information.
- To provide a method applicable to various data types beyond Raman mapping.
Main Methods:
- Compares each spectrum to adjacent spectra using correlation.
- Identifies CRs using the most similar neighbor (MSN) spectrum, with offset values adjusted for signal-to-noise ratio.
- Replaces contaminated pixels with scaled MSN spectra for data recovery.
Main Results:
- The algorithm effectively removes CRs, including those that would interfere with chemometric analysis like principal component analysis (PCA).
- No misdetections occurred with appropriate offset values.
- Underlying spectral features are fully recovered, demonstrating the algorithm's efficacy.
Conclusions:
- The presented algorithm offers a reliable solution for CR removal in Raman mapping.
- It is adaptable to diverse datasets, including time series and temperature profiles.
- This method enhances the quality of spectral data for subsequent quantitative and qualitative analyses.
Related Concept Videos
Raman Spectroscopy: Overview
The underlying principle of Raman spectroscopy is based on the interaction between light and matter, specifically molecules' inelastic scattering of photons. When a monochromatic beam of light, typically from a laser source, interacts with a sample, most scattered light has the same frequency as the incident light. This is known as Rayleigh scattering.
However, a small fraction of the scattered light exhibits a frequency shift due to the exchange of energy between the incident photons and the...
However, a small fraction of the scattered light exhibits a frequency shift due to the exchange of energy between the incident photons and the...
Raman Spectroscopy Instrumentation: Overview
A conventional Raman spectrophotometer includes a laser source, a sample holding system, a wavelength selector, and a detector.
The monochromatic laser source, typically using visible or near-infrared radiation, generates a highly focused beam of light. This light interacts with the molecules of the sample, scattering some of the light. Liquid and gaseous samples are usually tested in ordinary glass capillaries, while solids can be analyzed as powders packed in capillaries or as potassium...
The monochromatic laser source, typically using visible or near-infrared radiation, generates a highly focused beam of light. This light interacts with the molecules of the sample, scattering some of the light. Liquid and gaseous samples are usually tested in ordinary glass capillaries, while solids can be analyzed as powders packed in capillaries or as potassium...
2D NMR: Overview of Homonuclear Correlation Techniques
Homonuclear correlation spectroscopy (COSY) is a powerful technique used in Nuclear Magnetic Resonance (NMR) spectroscopy to study the correlations between nuclei of the same type within a molecule. It provides information about scalar couplings between adjacent nuclei, which helps determine connectivity and structural information. There are several COSY variants, each with its unique strengths and experimental parameters.
COSY90 is the standard two-dimensional (2D) COSY experiment that...
COSY90 is the standard two-dimensional (2D) COSY experiment that...
High-Resolution Mass Spectrometry (HRMS)
The resolution of a mass spectrometer depends on the efficiency of separating ions with different ion masses. The mass of an atom is approximated to the sum of the masses of protons and neutrons inside, considering the masses of protons and neutrons as equal. However, the masses of the proton (1.6726 × 10−24 g) and neutron (1.6749 × 10−24 g) are not truly equal. There is a minor error in the expression of atomic masses relative to the simplest atom of hydrogen. For example, the mass of helium...

