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Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
Protein Folding01:22

Protein Folding

Overview
Protein Folding01:25

Protein Folding

Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Folding01:22

Protein Folding

Overview
Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...

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Related Experiment Video

Updated: Jun 16, 2026

4D Imaging of Protein Aggregation in Live Cells
08:59

4D Imaging of Protein Aggregation in Live Cells

Published on: April 5, 2013

Protein folding requires crowd control in a simulated cell.

Benjamin R Jefferys1, Lawrence A Kelley, Michael J E Sternberg

  • 1Division of Molecular Biosciences, Biochemistry Building, Imperial College London, South Kensington, London SW7 2AZ, UK. benjamin.jefferys@imperial.ac.uk

Journal of Molecular Biology
|February 13, 2010
PubMed
Summary

Macromolecular crowding limits protein folding. Beyond 40% excluded volume, proteins fail to fold correctly, suggesting a cellular limit on crowding to prevent aggregation.

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Last Updated: Jun 16, 2026

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Published on: December 18, 2013

Area of Science:

  • Biochemistry
  • Computational Biology
  • Structural Biology

Background:

  • Macromolecular crowding significantly impacts cellular biochemical processes.
  • Understanding crowding effects is crucial for cell biology and protein science.

Purpose of the Study:

  • To computationally investigate the influence of macromolecular crowding on protein folding.
  • To analyze protein folding behavior across various crowding levels in a simulated cellular environment.

Main Methods:

  • Utilized a coarse-grained protein model based on Langevin dynamics.
  • Simulated folding of 12 small protein domains under different crowding conditions (0-40% excluded volume).
  • Employed random repetitions to approximate conformational ensembles.

Main Results:

  • Proteins folded into fewer native-like states as crowding approached 40% excluded volume.
  • Beyond 40% excluded volume, a sudden failure in protein folding was observed.
  • Proteins became trapped in extended conformations at high crowding levels.

Conclusions:

  • The intrinsic ability of small protein domains to fold may limit cellular macromolecular crowding.
  • High crowding levels can lead to protein misfolding and aggregation.
  • Results have implications for protein expression, size, chaperone activity, and aggregation.