Related Experiment Video
Updated: Jun 16, 2026

Novel Techniques for Observing Structural Dynamics of Photoresponsive Liquid Crystals
Published on: May 29, 2018
TDDFT study of the optical properties of Cy5 and its derivatives
Anu Bamgbelu1, Jing Wang, Jerzy Leszczynski
1Interdisciplinary Nanotoxicity Center, Department of Chemistry, Jackson State University, Jackson, Mississippi 39217, USA.
Abstract:
Cyanine dyes which show a very strong pi-pi* type electronic absorption have attracted attention as active components for optoelectronic applications. In the present study, the optical properties of Cy5 and Cy5-X (X = F, Cl, Br, and I) have been theoretically explored by applying the time-dependent density functional theory (TDDFT) method. The geometries of the ground state of the studied models have been fully optimized at the B3LYP/LanL2DZ and B3LYP/SDD levels of theory. Based upon the optimized structures of the ground state, the TDDFT calculations were performed to compute the vertical singlet excitation energies and the absorption spectra of the studied species. Compared with the optical properties of Cy5, halogen ions lower the vertical excitation energies and cause the maximum absorption wavelength to be red-shifted for the Cy5-X derivatives. By employing the polarizable continuum model (PCM) approach for all the gas-phase-optimized structures, the influence of solvent effects on the spectra of Cy5 and Cy5-X was considered in three solvents (ethanol, DMSO, and water). The obtained results suggest that the solvents may lower the excitation energy of Cy5. However, for the Cy5-X species the excitation energies are higher in solvents than in the gas phase.
More Related Videos
08:54Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
Published on: January 25, 2020
07:44Synthesis of Wavelength-shifting DNA Hybridization Probes by Using Photostable Cyanine Dyes
Published on: July 6, 2016
Related Concept Videos
UV–Vis Spectroscopy: Woodward–Fieser Rules
Properties of Enantiomers and Optical Activity
Spectroscopy of Carboxylic Acid Derivatives
In the...
UV–Vis Spectroscopy of Conjugated Systems
One of the factors influencing λmax is the extent of conjugation in the...
UV–Vis Spectroscopy: Molecular Electronic Transitions
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)