SERPING1 polymorphisms in polypoidal choroidal vasculopathy
Meng Li1, Feng Wen, Chengguo Zuo
1State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China.
Insights
Common genetic variants in the SERPING1 gene are not associated with polypoidal choroidal vasculopathy (PCV) in the Chinese Han population. This study found no evidence linking SERPING1 variants to PCV susceptibility.
Area of Science:
- Ophthalmology
- Genetics
- Molecular Biology
Background:
- Polypoidal choroidal vasculopathy (PCV) is a significant cause of vision loss.
- The genetic factors contributing to PCV susceptibility require further investigation.
- The complement component 1 inhibitor gene (SERPING1) is a potential candidate for genetic association studies in PCV.
Purpose of the Study:
- To investigate the association between common genetic variants in the SERPING1 gene and PCV.
- To determine if specific single nucleotide polymorphisms (SNPs) or haplotypes in SERPING1 are risk factors for PCV in a Chinese Han population.
Main Methods:
- Genotyping of four tag SNPs (rs2509897, rs1005510, rs11603020, rs2511989) in the SERPING1 gene was performed using PCR restriction fragment length polymorphism and DNA sequencing.
- A cohort of 118 PCV patients and 115 healthy controls from the Chinese Han population was analyzed.
- Haplotype analysis was conducted across the SERPING1 gene.
Main Results:
- No significant association was found between any of the four tag SNPs in SERPING1 and PCV (p=0.41-0.83).
- Evaluation of common haplotypes within the SERPING1 gene also did not reveal any association with PCV (p=0.49-0.82).
- The previously reported age-related macular degeneration-related risk factor SNP, rs2511989, showed no association with PCV in this cohort.
Conclusions:
- This study found no evidence to support the role of common SERPING1 gene variants in the susceptibility to PCV.
- The investigated SERPING1 variants, including rs2511989, do not appear to be major genetic risk factors for PCV in the Chinese Han population.
Purpose:
To investigate whether common genetic variants in the complement component 1 inhibitor gene (serpin peptidase inhibitor, clade G, member 1, SERPING1) are associated with polypoidal choroidal vasculopathy (PCV) in a Chinese Han population.
Methods:
DNA samples were obtained from 118 PCV patients and 115 healthy subjects. Data derived from the HapMap project were used to select tag single nucleotide polymorphisms (SNPs) across the extended SERPING1 region. A previously reported age-related macular degeneration-related risk factor (rs2511989) was forcibly included. Genotyping of each tag SNP was performed by PCR restriction fragment length polymorphism and direct DNA sequencing techniques.
Results:
Four SNPs for SERPING1, rs2509897, rs1005510, rs11603020, and rs2511989, were chosen as tag SNPs. None of these tag SNPs were associated with PCV, according to the single-SNP association test (p=0.41-0.83). Evaluation of common haplotypes across SERPING1 did not reveal any association with PCV (p=0.49-0.82).
Conclusions:
We found no evidence to support the role of any common SERPING1 variants, including the rs2511989 variant, in the susceptibility to PCV in a Chinese Han population.
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