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Updated: Jun 16, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Targeting biomolecular flexibility with metadynamics
Vanessa Leone1, Fabrizio Marinelli, Paolo Carloni
1International School for Advanced Studies (SISSA-ISAS) and DEMOCRITOS, Trieste, Italy.
Abstract:
Metadynamics calculations allow investigating structure, plasticity, and energetics in a variety of biological processes spanning from molecular docking to protein folding. Recent theoretical developments have led to applications to increasingly complex systems and processes stepping up the biological relevance of the problem solved. Here, after summarizing recent technical advances and applications, we give a perspective of the method as a tool for enzymology and for the prediction of NMR and other spectroscopic data.
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