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Imaging Biological Samples with Optical Microscopy01:18

Imaging Biological Samples with Optical Microscopy

Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
Computed Tomography01:10

Computed Tomography

Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
Phase Contrast and Differential Interference Contrast Microscopy01:26

Phase Contrast and Differential Interference Contrast Microscopy

Phase-Contrast Microscopes
In-phase-contrast microscopes, interference between light directly passing through a cell and light refracted by cellular components is used to create high-contrast, high-resolution images without staining. It is the oldest and simplest type of microscope that creates an image by altering the wavelengths of light rays passing through the specimen. Altered wavelength paths are created using an annular stop in the condenser. The annular stop produces a hollow cone of...
Total Internal Reflection Fluorescence Microscopy01:05

Total Internal Reflection Fluorescence Microscopy

Total internal reflection fluorescence microscopy or TIRF is an advanced microscopic technique used to visualize fluorophores in samples close to a solid surface with a higher refractive index, such as a glass coverslip. TIRF only allows fluorophores in proximity to the solid surface to be excited. When light from a medium with a lower refractive index (such as air) hits the glass coverslip at a critical angle, the light undergoes total internal reflection stead of passing through the glass.
Imaging Studies III: Computed Tomography01:27

Imaging Studies III: Computed Tomography

DefinitionComputed Tomography (CT) of the genitourinary (GU) tract is a non-invasive imaging modality that utilizes X-rays and computer processing to generate detailed cross-sectional images of the urinary system, encompassing the kidneys, ureters, bladder, and adjacent structures such as the adrenal glands.PurposeCT scans of the GU tract serve several diagnostic and therapeutic purposes, including:Diagnosis of Urinary Tract Diseases: Detects kidney stones, tumors, cysts, and congenital...
Confocal Fluorescence Microscopy01:16

Confocal Fluorescence Microscopy

Confocal microscopy is an advanced microscopic technique. The prime advantage of the confocal microscope over other microscopy techniques is its ability to block the out-of-focus light from the illuminated samples using pinholes. It is widely used with fluorescence optics to obtain high-resolution, sharp contrast images. Unlike optical microscopes, confocal microscopes use a focused beam of light laser to scan the entire sample surface at different z-planes. These microscopes are, therefore,...

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Updated: Jun 16, 2026

Integrated Photoacoustic Ophthalmoscopy and Spectral-domain Optical Coherence Tomography
11:21

Integrated Photoacoustic Ophthalmoscopy and Spectral-domain Optical Coherence Tomography

Published on: January 15, 2013

Generalized Jones matrix optical coherence tomography: performance and local birefringence imaging.

Shuichi Makita1, Masahiro Yamanari, Yoshiaki Yasuno

  • 1Computational Optics Group in University of Tsukuba, Tsukuba, Ibaraki, Japan. makita@optlab2.bk.tsukuba.ac.jp

Optics Express
|February 23, 2010
PubMed
Summary

Generalized Jones-matrix optical coherence tomography enables phase retardation imaging of biological tissues. This technique accurately measures local tissue birefringence, minimizing errors from background noise for in vivo applications.

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Multimodal Volumetric Retinal Imaging by Oblique Scanning Laser Ophthalmoscopy (oSLO) and Optical Coherence Tomography (OCT)
12:22

Multimodal Volumetric Retinal Imaging by Oblique Scanning Laser Ophthalmoscopy (oSLO) and Optical Coherence Tomography (OCT)

Published on: August 4, 2018

Area of Science:

  • Biomedical Optics
  • Optical Coherence Tomography
  • Birefringence Imaging

Background:

  • Phase retardation imaging provides insights into tissue polarization properties.
  • Generalized Jones-matrix optical coherence tomography (OCT) is a method for measuring these properties.
  • Understanding local birefringence is crucial for diagnosing tissue pathologies.

Purpose of the Study:

  • To describe generalized Jones-matrix OCT for phase retardation and local birefringence imaging.
  • To analyze phase retardation measurement errors caused by background noise.
  • To demonstrate in vivo application of the technique on human ocular and skin tissues.

Main Methods:

  • Utilizing two Jones matrices measured from backscattered light at tissue boundaries.
  • Performing theoretical, numerical, and experimental analysis of phase retardation errors.
  • Estimating minimum detectable phase retardation using numerical simulations.

Main Results:

  • The generalized Jones-matrix OCT method successfully images local birefringence.
  • Measurements using two orthogonal input polarization states minimize retardation error.
  • In vivo imaging of the human anterior eye chamber and skin was achieved.

Conclusions:

  • Generalized Jones-matrix OCT is a viable technique for local birefringence imaging of biological tissues.
  • The method demonstrates potential for non-invasive in vivo tissue characterization.
  • Further refinement can improve accuracy and sensitivity for clinical applications.